WormBase Tree Display for Variation: WBVar00246871
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WBVar00246871 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246871 | |||
Other_name | snp_Y25C1A[8] | ||||
Y25C1A.5.1:c.1530-69A>T | |||||
HGVSg | CHROMOSOME_II:g.3083760A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y25C1A | |
Flanking_sequences | aaataaattgattttttttatttgg | aaaacccgcaaaaaattgaaaaatt | |||
Mapping_target | Y25C1A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00021292 | |||
Transcript | Y25C1A.5.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y25C1A.5.1:c.1530-69A>T | ||||
Intron_number | 5/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.7349 VarS=AT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y25C1.8 | |||||
[20040130 db] this Allele was previously named snp_Y25C1.8 | |||||
[20090224 db] this Variation was previously named snp_Y25C1[8] | |||||
[20090224 db] original Wicks name : Y25C1A:25498..26066@112 Psnp=0.7349 VarS=AT | |||||
[20090224 db] original Wicks id : vl24e05.s1@325,t,33 | |||||
Method | SNP_Wicks |