WormBase Tree Display for Variation: WBVar00246744
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WBVar00246744 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246744 | |||
Other_name | snp_Y6B3B[6] | ||||
Y6B3B.5a.1:c.*26del | |||||
Y6B3B.5a.2:c.*26del | |||||
HGVSg | CHROMOSOME_I:g.13751310del | ||||
Sequence_details | SMap | S_parent | Sequence | Y6B3B | |
Flanking_sequences | taaaatggtaaaatgcaaaaaaaaa | taggaaaaaaactaaaaaattaaaa | |||
Mapping_target | Y6B3B | ||||
Type_of_mutation | Deletion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00012390 | |||
Transcript | Y6B3B.5a.1 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y6B3B.5a.1:c.*26del | ||||
cDNA_position | 1134 | ||||
Exon_number | 11/11 | ||||
Y6B3B.5a.2 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y6B3B.5a.2:c.*26del | ||||
cDNA_position | 1092 | ||||
Exon_number | 11/11 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8888 VarD1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y6B3B.6 | |||||
[20040130 db] this Allele was previously named snp_Y6B3B.6 | |||||
[20090224 db] original Wicks name : Y6B3B:50799..51798@231 Psnp=0.8888 VarD1=A | |||||
[20090224 db] original Wicks id : yy45e10.s1@188,-,59 eam51f01.s1@84,-,62 | |||||
Method | SNP_Wicks |