WormBase Tree Display for Variation: WBVar00246730

WBVar00246730 Name: Public_name: WBVar00246730
    Other_name: snp_W10G11[7]
      haw128801
      cewivar00183274
      CE14824:p.Asn160=
      W10G11.13.1:c.480C>T
    HGVSg: CHROMOSOME_II:g.3577939C>T
  Sequence_details: SMap: S_parent: Sequence: W10G11
    Flanking_sequences: tcttccagaaggggcagccagataa atgtacggcaaacagaactgtgcga
    Mapping_target: W10G11
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          WGS_Yanai
          Million_mutation_project_reanalysis
    Laboratory: AX
    Person: WBPerson4037
    Analysis: SNP_Wicks
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar00548666
        WBVar01368142
    Status: Live
  Affects: Gene: WBGene00021143
    Transcript: W10G11.13.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: W10G11.13.1:c.480C>T
        HGVSp: CE14824:p.Asn160=
        cDNA_position: 483
        CDS_position: 480
        Protein_position: 160
        Exon_number: 4/5
        Codon_change: aaC/aaT
        Amino_acid_change: N
  Reference: WBPaper00038208
    WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9430 VarS=CT
    Enzymes. Bristol-specific: [AflIII,BspLU11I,BstNSI,CviAII,Hin1II,Hin8II,HpyCH4I,HpyI,Hsp92II,Lsp1270I,NlaIII,NspHI,NspI,PauAI,PciI,PunAII,XceI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_W10G11.7
    [20040130 db] this Allele was previously named snp_W10G11.7
    [20090224 db] original Wicks name : W10G11:25654..26629@772 Psnp=0.9430 VarS=CT
    [20090224 db] original Wicks id : eam55d02.s1@127,t,62
    [20090224 db] Snip-SNP
  Method: SNP_Wicks