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WormBase Tree Display for Variation: WBVar00246677

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Name Class

WBVar00246677EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246677
Other_namesnp_W09C2[1]
cewivar00208481
W09C2.1c.1:c.1126-270G>A
W09C2.1b.1:c.913-270G>A
W09C2.1a.1:c.1129-270G>A
W09C2.1d.1:c.1126-270G>A
W09C2.1f.1:c.910-270G>A
HGVSgCHROMOSOME_IV:g.9619050G>A
Sequence_detailsSMapS_parentSequenceW09C2
Flanking_sequencestaatcgcgatgccgacgcgataaacgattcatcgtttttgctataaagtg
Mapping_targetW09C2
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00001249
TranscriptW09C2.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW09C2.1f.1:c.910-270G>A
Intron_number6/7
W09C2.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW09C2.1c.1:c.1126-270G>A
Intron_number6/6
W09C2.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW09C2.1a.1:c.1129-270G>A
Intron_number8/9
W09C2.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW09C2.1d.1:c.1126-270G>A
Intron_number8/9
W09C2.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW09C2.1b.1:c.913-270G>A
Intron_number6/7
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8934 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_W09C2.1
[20040130 db] this Allele was previously named snp_W09C2.1
[20090224 db] original Wicks name : W09C2:8951..10100@729 Psnp=0.8934 VarS=AG
[20090224 db] original Wicks id : vm24e04.s1@282,a,56 vm23b03.s1@653,a,16
MethodSNP_Wicks