WormBase Tree Display for Variation: WBVar00246677
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WBVar00246677 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246677 | |||
Other_name | snp_W09C2[1] | ||||
cewivar00208481 | |||||
W09C2.1c.1:c.1126-270G>A | |||||
W09C2.1b.1:c.913-270G>A | |||||
W09C2.1a.1:c.1129-270G>A | |||||
W09C2.1d.1:c.1126-270G>A | |||||
W09C2.1f.1:c.910-270G>A | |||||
HGVSg | CHROMOSOME_IV:g.9619050G>A | ||||
Sequence_details | SMap | S_parent | Sequence | W09C2 | |
Flanking_sequences | taatcgcgatgccgacgcgataaac | gattcatcgtttttgctataaagtg | |||
Mapping_target | W09C2 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00001249 | |||
Transcript | W09C2.1f.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | W09C2.1f.1:c.910-270G>A | ||||
Intron_number | 6/7 | ||||
W09C2.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W09C2.1c.1:c.1126-270G>A | ||||
Intron_number | 6/6 | ||||
W09C2.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W09C2.1a.1:c.1129-270G>A | ||||
Intron_number | 8/9 | ||||
W09C2.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W09C2.1d.1:c.1126-270G>A | ||||
Intron_number | 8/9 | ||||
W09C2.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W09C2.1b.1:c.913-270G>A | ||||
Intron_number | 6/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8934 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_W09C2.1 | |||||
[20040130 db] this Allele was previously named snp_W09C2.1 | |||||
[20090224 db] original Wicks name : W09C2:8951..10100@729 Psnp=0.8934 VarS=AG | |||||
[20090224 db] original Wicks id : vm24e04.s1@282,a,56 vm23b03.s1@653,a,16 | |||||
Method | SNP_Wicks |