WormBase Tree Display for Variation: WBVar00246615
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WBVar00246615 | Name | Public_name | WBVar00246615 | ||
---|---|---|---|---|---|
Other_name | snp_W04B5[1] | ||||
haw141676 | |||||
cewivar00195138 | |||||
W04B5.3a.1:c.595-299T>C | |||||
W04B5.3b.1:c.595-299T>C | |||||
W04B5.3c.1:c.595-299T>C | |||||
HGVSg | CHROMOSOME_III:g.2421007T>C | ||||
Sequence_details | SMap | S_parent | Sequence | W04B5 | |
Flanking_sequences | gccaagaccttcaatttgacaccca | catgactatattccgatcattttgggtcccaccgcga | |||
Mapping_target | W04B5 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00561541 | |||
Status | Live | ||||
Affects | Gene | WBGene00021020 | |||
Transcript | W04B5.3a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | W04B5.3a.1:c.595-299T>C | ||||
Intron_number | 7/13 | ||||
W04B5.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W04B5.3c.1:c.595-299T>C | ||||
Intron_number | 7/12 | ||||
W04B5.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W04B5.3b.1:c.595-299T>C | ||||
Intron_number | 6/11 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8806 VarS=CT | ||||
Enzymes. Bristol-specific: [BspHI,Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV,PagI,RcaI,RhcI,RspXI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_W04B5.1 | |||||
[20040130 db] this Allele was previously named snp_W04B5.1 | |||||
[20090224 db] original Wicks name : W04B5:15346..16172@257 Psnp=0.8806 VarS=CT | |||||
[20090224 db] original Wicks id : vl28a09.s1@187,c,39 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |