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WormBase Tree Display for Variation: WBVar00246615

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Name Class

WBVar00246615NamePublic_nameWBVar00246615
Other_namesnp_W04B5[1]
haw141676
cewivar00195138
W04B5.3a.1:c.595-299T>C
W04B5.3b.1:c.595-299T>C
W04B5.3c.1:c.595-299T>C
HGVSgCHROMOSOME_III:g.2421007T>C
Sequence_detailsSMapS_parentSequenceW04B5
Flanking_sequencesgccaagaccttcaatttgacacccacatgactatattccgatcattttgggtcccaccgcga
Mapping_targetW04B5
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00561541
StatusLive
AffectsGeneWBGene00021020
TranscriptW04B5.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04B5.3a.1:c.595-299T>C
Intron_number7/13
W04B5.3c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04B5.3c.1:c.595-299T>C
Intron_number7/12
W04B5.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04B5.3b.1:c.595-299T>C
Intron_number6/11
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8806 VarS=CT
Enzymes. Bristol-specific: [BspHI,Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV,PagI,RcaI,RhcI,RspXI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_W04B5.1
[20040130 db] this Allele was previously named snp_W04B5.1
[20090224 db] original Wicks name : W04B5:15346..16172@257 Psnp=0.8806 VarS=CT
[20090224 db] original Wicks id : vl28a09.s1@187,c,39
[20090224 db] Snip-SNP
MethodSNP_Wicks