WormBase Tree Display for Variation: WBVar00246592
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WBVar00246592 | Name | Public_name | WBVar00246592 | ||
---|---|---|---|---|---|
Other_name | snp_W03A5[6] | ||||
haw143411 | |||||
cewivar00196595 | |||||
W03A5.6b.1:c.738-108G>T | |||||
W03A5.6a.1:c.732-108G>T | |||||
HGVSg | CHROMOSOME_III:g.5439063C>A | ||||
Sequence_details | SMap | S_parent | Sequence | W03A5 | |
Flanking_sequences | tcagcacacaaaaggacccaattat | gctcggccagcagtttaattaactt | |||
Mapping_target | W03A5 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00563276 | |||
Status | Live | ||||
Affects | Gene | WBGene00020970 | |||
Transcript | W03A5.6b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | W03A5.6b.1:c.738-108G>T | ||||
Intron_number | 8/13 | ||||
W03A5.6a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W03A5.6a.1:c.732-108G>T | ||||
Intron_number | 8/13 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9391 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_W03A5.6 | |||||
[20040130 db] this Allele was previously named snp_W03A5.6 | |||||
[20090224 db] original Wicks name : W03A5:34095..35012@137 Psnp=0.9391 VarS=AC | |||||
[20090224 db] original Wicks id : eam51h05.s1@66,a,51 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |