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WormBase Tree Display for Variation: WBVar00246592

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Name Class

WBVar00246592NamePublic_nameWBVar00246592
Other_namesnp_W03A5[6]
haw143411
cewivar00196595
W03A5.6b.1:c.738-108G>T
W03A5.6a.1:c.732-108G>T
HGVSgCHROMOSOME_III:g.5439063C>A
Sequence_detailsSMapS_parentSequenceW03A5
Flanking_sequencestcagcacacaaaaggacccaattatgctcggccagcagtttaattaactt
Mapping_targetW03A5
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00563276
StatusLive
AffectsGeneWBGene00020970
TranscriptW03A5.6b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW03A5.6b.1:c.738-108G>T
Intron_number8/13
W03A5.6a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW03A5.6a.1:c.732-108G>T
Intron_number8/13
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9391 VarS=AC
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_W03A5.6
[20040130 db] this Allele was previously named snp_W03A5.6
[20090224 db] original Wicks name : W03A5:34095..35012@137 Psnp=0.9391 VarS=AC
[20090224 db] original Wicks id : eam51h05.s1@66,a,51
[20090224 db] Snip-SNP
MethodSNP_Wicks