WormBase Tree Display for Variation: WBVar00246586
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WBVar00246586 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246586 | |||
Other_name | snp_W02G9[5] | ||||
W02G9.2b.1:c.61-320C>A | |||||
W02G9.2a.1:c.-51-320C>A | |||||
W02G9.2a.3:c.-51-320C>A | |||||
HGVSg | CHROMOSOME_V:g.2682906C>A | ||||
Sequence_details | SMap | S_parent | Sequence | W02G9 | |
Flanking_sequences | ttcagaaaaaaaaacataacgaagc | ctaactggactttatcctctgattt | |||
Mapping_target | W02G9 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00020952 | |||
Transcript | W02G9.2a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | W02G9.2a.1:c.-51-320C>A | ||||
Intron_number | 1/8 | ||||
W02G9.2a.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W02G9.2a.3:c.-51-320C>A | ||||
Intron_number | 1/8 | ||||
W02G9.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W02G9.2b.1:c.61-320C>A | ||||
Intron_number | 1/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9328 VarS=AC | ||||
Enzymes. Bristol-specific: [CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_W02G9.5 | |||||
[20040130 db] this Allele was previously named snp_W02G9.5 | |||||
[20090224 db] original Wicks name : W02G9:29179..30140@543 Psnp=0.9328 VarS=AC | |||||
[20090224 db] original Wicks id : eam66a12.s1@351,a,47 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |