WormBase Tree Display for Variation: WBVar00246457
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| WBVar00246457 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00246457 | |||
| Other_name | snp_T25E12[2] | ||||
| cewivar00253761 | |||||
| CE47844:p.Cys285= | |||||
| T25E12.10.1:c.855T>C | |||||
| HGVSg | CHROMOSOME_V:g.16734195A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T25E12 | |
| Flanking_sequences | atactaaatcggcgcctttctcgtt | caaaaccgttgagcttgaggaattg | |||
| Mapping_target | T25E12 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (16) | |||||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012025 | |||
| Transcript | T25E12.10.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T25E12.10.1:c.855T>C | ||||
| HGVSp | CE47844:p.Cys285= | ||||
| cDNA_position | 879 | ||||
| CDS_position | 855 | ||||
| Protein_position | 285 | ||||
| Exon_number | 7/8 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.6951 VarS=AG | ||||
| Enzymes. Bristol-specific: [Hpy51I,Hpy8II,Hpy99II,HpyF13I,HpyF1I,HpyF25II,HpyF31II,HpyF34II,HpyF35IV,HpyF36I,HpyF40III,HpyF48I,HpyF49II,HpyF4I,HpyF51I,HpyF62III,HpyF6II,HpyF9I,MaeIII,NmuCI,Tsp45I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_T25E12.2 | |||||
| [20040130 db] this Allele was previously named snp_T25E12.2 | |||||
| [20090224 db] original Wicks name : T25E12:9820..10739@487 Psnp=0.6951 VarS=AG | |||||
| [20090224 db] original Wicks id : eam84c01.s1@411,g,32 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
