WormBase Tree Display for Variation: WBVar00246280
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WBVar00246280 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246280 | |||
Other_name | snp_T16G12[3] | ||||
cewivar00151751 | |||||
T16G12.3.1:c.-55G>T | |||||
T16G12.3.2:c.-55G>T | |||||
HGVSg | CHROMOSOME_III:g.10050908G>T | ||||
Sequence_details | SMap | S_parent | Sequence | T16G12 | |
Flanking_sequences | gagccggaaacggatccagagtcag | gaggcacgtggcgcggcttccagcg | |||
Mapping_target | T16G12 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00011804 | |||
Transcript | T16G12.3.2 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T16G12.3.2:c.-55G>T | ||||
cDNA_position | 209 | ||||
Exon_number | 1/9 | ||||
T16G12.3.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T16G12.3.1:c.-55G>T | ||||
cDNA_position | 288 | ||||
Exon_number | 1/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.7699 VarS=GT | ||||
Enzymes. Bristol-specific: [Bsc107I,Bsc4I,Bse23I,BseLI,BsiYI,BslI,BsmYI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_T16G12.3 | |||||
[20040130 db] this Allele was previously named snp_T16G12.3 | |||||
[20090224 db] original Wicks name : T16G12:11524..12399@767 Psnp=0.7699 VarS=GT | |||||
[20090224 db] original Wicks id : vd51d08.s1@704,t,34 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |