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WormBase Tree Display for Variation: WBVar00246280

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Name Class

WBVar00246280EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246280
Other_namesnp_T16G12[3]
cewivar00151751
T16G12.3.1:c.-55G>T
T16G12.3.2:c.-55G>T
HGVSgCHROMOSOME_III:g.10050908G>T
Sequence_detailsSMapS_parentSequenceT16G12
Flanking_sequencesgagccggaaacggatccagagtcaggaggcacgtggcgcggcttccagcg
Mapping_targetT16G12
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00006637From_analysisMillion_mutation_project_reanalysis
WBStrain00022886From_analysisMillion_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
WBStrain00023665From_analysisMillion_mutation_project_reanalysis
WBStrain00031113From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00011804
TranscriptT16G12.3.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScT16G12.3.2:c.-55G>T
cDNA_position209
Exon_number1/9
T16G12.3.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScT16G12.3.1:c.-55G>T
cDNA_position288
Exon_number1/8
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.7699 VarS=GT
Enzymes. Bristol-specific: [Bsc107I,Bsc4I,Bse23I,BseLI,BsiYI,BslI,BsmYI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_T16G12.3
[20040130 db] this Allele was previously named snp_T16G12.3
[20090224 db] original Wicks name : T16G12:11524..12399@767 Psnp=0.7699 VarS=GT
[20090224 db] original Wicks id : vd51d08.s1@704,t,34
[20090224 db] Snip-SNP
MethodSNP_Wicks