WormBase Tree Display for Variation: WBVar00246278

WBVar00246278 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00246278
    Other_name: snp_T16G12[1]
      T16G12.3.3:c.*923C>T
      T16G12.3.1:c.*923C>T
      T16G12.12.1:c.-14+136C>T
      T16G12.3.5:c.*787+136C>T
      T16G12.3.4:c.*787+136C>T
      T16G12.3.2:c.*787+136C>T
    HGVSg: CHROMOSOME_III:g.10053998C>T
  Sequence_details: SMap: S_parent: Sequence: T16G12
    Flanking_sequences: gtgttgtcacttgggctccgcagagcccgtccgtc caactttgcggatataggcgcttggtcaggttcacccacgaacccacaatcaccatccgcatgagtcgctcactctctgttccattcgttcactcagaaacattccattctttaattaattaaatattattatttgaattaccgccatttgcgtatttcctaatgcaagtgcgcccccccccccg
    Mapping_target: T16G12
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00269433
      WBGene00011804
    Transcript: T16G12.3.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T16G12.3.2:c.*787+136C>T
        Intron_number: 8/8
      T16G12.12.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T16G12.12.1:c.-14+136C>T
        Intron_number: 1/5
      T16G12.3.3 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: T16G12.3.3:c.*923C>T
        cDNA_position: 1533
        Exon_number: 7/7
      T16G12.3.5 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T16G12.3.5:c.*787+136C>T
        Intron_number: 7/7
      T16G12.3.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: T16G12.3.1:c.*923C>T
        cDNA_position: 1847
        Exon_number: 8/8
      T16G12.3.4 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T16G12.3.4:c.*787+136C>T
        Intron_number: 7/7
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.6951 VarS=CT
    Enzymes. Bristol-specific: [BsmFI,BspLU11III,BstOZ616I]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_T16G12.1
    [20040130 db] this Allele was previously named snp_T16G12.1
    [20090224 db] original Wicks name : T16G12:11524..12399@196 Psnp=0.6951 VarS=CT
    [20090224 db] original Wicks id : vd51d08.s1@140,t,32
    [20090224 db] Snip-SNP
  Method: SNP_Wicks