WormBase Tree Display for Variation: WBVar00246197
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WBVar00246197 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246197 | |||
Other_name | snp_T10B5[4] | ||||
cewivar00222999 | |||||
T10B5.10a.1:c.322-875T>A | |||||
T10B5.10b.1:c.286-875T>A | |||||
HGVSg | CHROMOSOME_V:g.1854435A>T | ||||
Sequence_details | SMap | S_parent | Sequence | T10B5 | |
Flanking_sequences | gtggtcggcaattgccgttcgacca | ttttttgtctacaaaaattgtcaag | |||
Mapping_target | T10B5 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00020396 | |||
Transcript | T10B5.10b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T10B5.10b.1:c.286-875T>A | ||||
Intron_number | 3/6 | ||||
T10B5.10a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T10B5.10a.1:c.322-875T>A | ||||
Intron_number | 4/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8657 VarS=AT | ||||
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_T10B5.4 | |||||
[20040130 db] this Allele was previously named snp_T10B5.4 | |||||
[20090224 db] original Wicks name : T10B5:19432..20226@527 Psnp=0.8657 VarS=AT | |||||
[20090224 db] original Wicks id : vr80f07.s1@463,t,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |