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WormBase Tree Display for Variation: WBVar00246197

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Name Class

WBVar00246197EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246197
Other_namesnp_T10B5[4]
cewivar00222999
T10B5.10a.1:c.322-875T>A
T10B5.10b.1:c.286-875T>A
HGVSgCHROMOSOME_V:g.1854435A>T
Sequence_detailsSMapS_parentSequenceT10B5
Flanking_sequencesgtggtcggcaattgccgttcgaccattttttgtctacaaaaattgtcaag
Mapping_targetT10B5
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00020396
TranscriptT10B5.10b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT10B5.10b.1:c.286-875T>A
Intron_number3/6
T10B5.10a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT10B5.10a.1:c.322-875T>A
Intron_number4/8
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8657 VarS=AT
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_T10B5.4
[20040130 db] this Allele was previously named snp_T10B5.4
[20090224 db] original Wicks name : T10B5:19432..20226@527 Psnp=0.8657 VarS=AT
[20090224 db] original Wicks id : vr80f07.s1@463,t,38
[20090224 db] Snip-SNP
MethodSNP_Wicks