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WormBase Tree Display for Variation: WBVar00246187

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Name Class

WBVar00246187NamePublic_nameWBVar00246187
Other_namesnp_T09E11[7]
haw120871
cewivar00172464
T09E11.7.1:c.609T>C
CE13509:p.Phe203=
HGVSgCHROMOSOME_I:g.12354207T>C
Sequence_detailsSMapS_parentSequenceT09E11
Flanking_sequencesttgtgtctcctccagatgtttcattcaacagtgtgtttgcaagaagttggcagttttaatcggcatggtagttcacctga
Mapping_targetT09E11
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (21)
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01287312
WBVar01426125
WBVar00540736
WBVar01351804
StatusLive
AffectsGeneWBGene00011656
TranscriptT09E11.7.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScT09E11.7.1:c.609T>C
HGVSpCE13509:p.Phe203=
cDNA_position609
CDS_position609
Protein_position203
Exon_number3/10
Codon_changettT/ttC
Amino_acid_changeF
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9427 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_T09E11.7
[20040130 db] this Allele was previously named snp_T09E11.7
[20090224 db] original Wicks name : T09E11:15677..16673@808 Psnp=0.9427 VarS=CT
[20090224 db] original Wicks id : eam43c08.s1@119,c,59
MethodSNP_Wicks