WormBase Tree Display for Variation: WBVar00246115

WBVar00246115 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00246115
    Other_name: snp_T06D10[1]
      T06D10.1.3:c.*115-276del
      T06D10.1.2:c.*498del
      T06D10.1.1:c.*115-276del
    HGVSg: CHROMOSOME_I:g.9071180del
  Sequence_details: SMap: S_parent: Sequence: T06D10
    Flanking_sequences: ggaagtttcaagatatttttttttt aatcataatttgaaaatcgagtaaa
    Mapping_target: T06D10
    Type_of_mutation: Deletion: T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00011531
    Transcript: T06D10.1.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T06D10.1.3:c.*115-276del
        Intron_number: 7/7
      T06D10.1.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: T06D10.1.1:c.*115-276del
        Intron_number: 7/7
      T06D10.1.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: T06D10.1.2:c.*498del
        cDNA_position: 3715
        Exon_number: 7/7
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9226 VarD1=T
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_T06D10.1
    [20040130 db] this Allele was previously named snp_T06D10.1
    [20090224 db] original Wicks name : T06D10:3120..4097@456 Psnp=0.9226 VarD1=T
    [20090224 db] original Wicks id : eam48g12.s1@382,-,62
  Method: SNP_Wicks