WormBase Tree Display for Variation: WBVar00245977
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WBVar00245977 | Name | Public_name | WBVar00245977 | ||
---|---|---|---|---|---|
Other_name | snp_T01A4[2] | ||||
haw116803 | |||||
cewivar00165451 | |||||
C41D11.1e.1:c.885G>A | |||||
CE46891:p.Lys295= | |||||
C41D11.1d.1:c.942-4362G>A | |||||
C41D11.1b.2:c.*183-4362G>A | |||||
HGVSg | CHROMOSOME_I:g.4464780G>A | ||||
Sequence_details | SMap | S_parent | Sequence | T01A4 | |
Flanking_sequences | agcagtttcttggtggggacatgaa | ttccagtacgatgtcctgggccacc | |||
Mapping_target | T01A4 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00536668 | |||
WBVar01343679 | |||||
Status | Live | ||||
Affects | Gene | WBGene00016561 | |||
Transcript | C41D11.1d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C41D11.1d.1:c.942-4362G>A | ||||
Intron_number | 8/9 | ||||
C41D11.1b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C41D11.1b.2:c.*183-4362G>A | ||||
Intron_number | 9/9 | ||||
C41D11.1e.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | C41D11.1e.1:c.885G>A | ||||
HGVSp | CE46891:p.Lys295= | ||||
cDNA_position | 885 | ||||
CDS_position | 885 | ||||
Protein_position | 295 | ||||
Exon_number | 2/5 | ||||
Codon_change | aaG/aaA | ||||
Amino_acid_change | K | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.9427 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_T01A4.2 | |||||
[20040130 db] this Allele was previously named snp_T01A4.2 | |||||
[20090224 db] original Wicks name : T01A4:593..1546@338 Psnp=0.9427 VarS=AG | |||||
[20090224 db] original Wicks id : eam60d04.s1@269,a,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |