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WormBase Tree Display for Variation: WBVar00245977

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Name Class

WBVar00245977NamePublic_nameWBVar00245977
Other_namesnp_T01A4[2]
haw116803
cewivar00165451
C41D11.1e.1:c.885G>A
CE46891:p.Lys295=
C41D11.1d.1:c.942-4362G>A
C41D11.1b.2:c.*183-4362G>A
HGVSgCHROMOSOME_I:g.4464780G>A
Sequence_detailsSMapS_parentSequenceT01A4
Flanking_sequencesagcagtttcttggtggggacatgaattccagtacgatgtcctgggccacc
Mapping_targetT01A4
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00536668
WBVar01343679
StatusLive
AffectsGeneWBGene00016561
TranscriptC41D11.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC41D11.1d.1:c.942-4362G>A
Intron_number8/9
C41D11.1b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC41D11.1b.2:c.*183-4362G>A
Intron_number9/9
C41D11.1e.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScC41D11.1e.1:c.885G>A
HGVSpCE46891:p.Lys295=
cDNA_position885
CDS_position885
Protein_position295
Exon_number2/5
Codon_changeaaG/aaA
Amino_acid_changeK
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9427 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_T01A4.2
[20040130 db] this Allele was previously named snp_T01A4.2
[20090224 db] original Wicks name : T01A4:593..1546@338 Psnp=0.9427 VarS=AG
[20090224 db] original Wicks id : eam60d04.s1@269,a,59
[20090224 db] Snip-SNP
MethodSNP_Wicks