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WormBase Tree Display for Variation: WBVar00245874

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Name Class

WBVar00245874NamePublic_nameWBVar00245874
Other_namesnp_R08E5[4]
haw164380
cewivar00229802
R08E5.1b.3:c.-207+21T>C
R08E5.1b.2:c.-340T>C
R08E5.1b.1:c.-144+21T>C
R08E5.1a.1:c.36+21T>C
HGVSgCHROMOSOME_V:g.3771419A>G
Sequence_detailsSMapS_parentSequenceR08E5
Flanking_sequencesaactacaagcaggttaggcgcggtattagaggcaaatcaactcacgaata
Mapping_targetR08E5
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00006622From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00584245
StatusLive
AffectsGeneWBGene00019961
TranscriptR08E5.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScR08E5.1a.1:c.36+21T>C
Intron_number2/6
R08E5.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScR08E5.1b.1:c.-144+21T>C
Intron_number1/4
R08E5.1b.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScR08E5.1b.3:c.-207+21T>C
Intron_number1/4
R08E5.1b.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScR08E5.1b.2:c.-340T>C
cDNA_position91
Exon_number1/5
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8928 VarS=AG
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_R08E5.4
[20040130 db] this Allele was previously named snp_R08E5.4
[20090224 db] original Wicks name : R08E5:1774..3055@773 Psnp=0.8928 VarS=AG
[20090224 db] original Wicks id : eam63b03.s1@109,g,62 eam67e02.s1@454,g,32
[20090224 db] Snip-SNP
MethodSNP_Wicks