WormBase Tree Display for Variation: WBVar00245874
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WBVar00245874 | Name | Public_name | WBVar00245874 | ||
---|---|---|---|---|---|
Other_name | snp_R08E5[4] | ||||
haw164380 | |||||
cewivar00229802 | |||||
R08E5.1b.3:c.-207+21T>C | |||||
R08E5.1b.2:c.-340T>C | |||||
R08E5.1b.1:c.-144+21T>C | |||||
R08E5.1a.1:c.36+21T>C | |||||
HGVSg | CHROMOSOME_V:g.3771419A>G | ||||
Sequence_details | SMap | S_parent | Sequence | R08E5 | |
Flanking_sequences | aactacaagcaggttaggcgcggta | ttagaggcaaatcaactcacgaata | |||
Mapping_target | R08E5 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00584245 | |||
Status | Live | ||||
Affects | Gene | WBGene00019961 | |||
Transcript | R08E5.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R08E5.1a.1:c.36+21T>C | ||||
Intron_number | 2/6 | ||||
R08E5.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R08E5.1b.1:c.-144+21T>C | ||||
Intron_number | 1/4 | ||||
R08E5.1b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R08E5.1b.3:c.-207+21T>C | ||||
Intron_number | 1/4 | ||||
R08E5.1b.2 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R08E5.1b.2:c.-340T>C | ||||
cDNA_position | 91 | ||||
Exon_number | 1/5 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8928 VarS=AG | ||||
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_R08E5.4 | |||||
[20040130 db] this Allele was previously named snp_R08E5.4 | |||||
[20090224 db] original Wicks name : R08E5:1774..3055@773 Psnp=0.8928 VarS=AG | |||||
[20090224 db] original Wicks id : eam63b03.s1@109,g,62 eam67e02.s1@454,g,32 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |