WormBase Tree Display for Variation: WBVar00245613
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WBVar00245613 | Name | Public_name | WBVar00245613 | ||
---|---|---|---|---|---|
Other_name | snp_K10F12[6] | ||||
cewivar00192151 | |||||
K10F12.3b.1:c.2905-139G>A | |||||
K10F12.3a.1:c.2926-139G>A | |||||
HGVSg | CHROMOSOME_III:g.376813G>A | ||||
Sequence_details | SMap | S_parent | Sequence | K10F12 | |
Flanking_sequences | gaaaaatccggaaaatcggcaaacc | gcaagccggtaaattgccggaattg | |||
Mapping_target | K10F12 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01389023 | |||
Status | Live | ||||
Affects | Gene | WBGene00305527 | |||
WBGene00004045 | |||||
Transcript | K10F12.11 | ||||
K10F12.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K10F12.3b.1:c.2905-139G>A | ||||
Intron_number | 19/21 | ||||
K10F12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K10F12.3a.1:c.2926-139G>A | ||||
Intron_number | 19/21 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.7216 VarS=AG | ||||
Enzymes. Bristol-specific: [Asp748I,Bco118I,Bco27I,BsaZI,BscRI,Bse118I,Bse634I,BshMI,BsiSI,Bsp116I,Bsp1591II,Bsp21I,Bsp47I,Bsp48I,Bsp5I,BsrFI,BssAI,Bst40I,BstB7SI,Bsu1192I,BsuFI,Cfr10I,FinII,HapII,Hin2I,Hin5I,HpaII,HpyF43I,HpyVIII,MniII,MnoI,MspI,Pde137I,Pme35I,SecII,SfaGUI,Sth134I,TseDI,Uba1128I,Uba1141I,Uba1267I,Uba1338I,Uba1355I,Uba1439I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_K10F12.6 | |||||
[20040130 db] this Allele was previously named snp_K10F12.6 | |||||
[20090224 db] original Wicks name : K10F12:16756..18632@1188 Psnp=0.7216 VarS=AG | |||||
[20090224 db] original Wicks id : eam35c10.s1@207,a,23 eam35f05.s1@147,a,8 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |