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WormBase Tree Display for Variation: WBVar00245613

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Name Class

WBVar00245613NamePublic_nameWBVar00245613
Other_namesnp_K10F12[6]
cewivar00192151
K10F12.3b.1:c.2905-139G>A
K10F12.3a.1:c.2926-139G>A
HGVSgCHROMOSOME_III:g.376813G>A
Sequence_detailsSMapS_parentSequenceK10F12
Flanking_sequencesgaaaaatccggaaaatcggcaaaccgcaagccggtaaattgccggaattg
Mapping_targetK10F12
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
LaboratoryAX
AnalysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01389023
StatusLive
AffectsGeneWBGene00305527
WBGene00004045
TranscriptK10F12.11
K10F12.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK10F12.3b.1:c.2905-139G>A
Intron_number19/21
K10F12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK10F12.3a.1:c.2926-139G>A
Intron_number19/21
ReferenceWBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.7216 VarS=AG
Enzymes. Bristol-specific: [Asp748I,Bco118I,Bco27I,BsaZI,BscRI,Bse118I,Bse634I,BshMI,BsiSI,Bsp116I,Bsp1591II,Bsp21I,Bsp47I,Bsp48I,Bsp5I,BsrFI,BssAI,Bst40I,BstB7SI,Bsu1192I,BsuFI,Cfr10I,FinII,HapII,Hin2I,Hin5I,HpaII,HpyF43I,HpyVIII,MniII,MnoI,MspI,Pde137I,Pme35I,SecII,SfaGUI,Sth134I,TseDI,Uba1128I,Uba1141I,Uba1267I,Uba1338I,Uba1355I,Uba1439I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_K10F12.6
[20040130 db] this Allele was previously named snp_K10F12.6
[20090224 db] original Wicks name : K10F12:16756..18632@1188 Psnp=0.7216 VarS=AG
[20090224 db] original Wicks id : eam35c10.s1@207,a,23 eam35f05.s1@147,a,8
[20090224 db] Snip-SNP
MethodSNP_Wicks