WormBase Tree Display for Variation: WBVar00245588
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WBVar00245588 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245588 | |||
Other_name | snp_K10B3[1] | ||||
cewivar00271558 | |||||
K10B3.7.1:c.240+9A>T | |||||
HGVSg | CHROMOSOME_X:g.3113073T>A | ||||
Sequence_details | SMap | S_parent | Sequence | K10B3 | |
Flanking_sequences | atattaggtgaaatctaattggaaa | aattctaccttgatcttgtgctggg | |||
Mapping_target | K10B3 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00305526 | |||
WBGene00001685 | |||||
Transcript | K10B3.13 | ||||
K10B3.7.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K10B3.7.1:c.240+9A>T | ||||
Intron_number | 2/4 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9427 VarS=AT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_K10B3.1 | |||||
[20040130 db] this Allele was previously named snp_K10B3.1 | |||||
[20090224 db] original Wicks name : K10B3:9222..10013@478 Psnp=0.9427 VarS=AT | |||||
[20090224 db] original Wicks id : vr89a05.s1@253,a,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |