WormBase Tree Display for Variation: WBVar00245576
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WBVar00245576 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245576 | |||
Other_name | snp_K09E9[5] | ||||
K09E9.4.1:c.91-194_91-193insGTGTG | |||||
HGVSg | CHROMOSOME_X:g.15629828_15629829insCACAC | ||||
Sequence_details | SMap | S_parent | Sequence | K09E9 | |
Flanking_sequences | ttggttttgtgactctgccgtctgatcacagtgagccttcatgtctgacattcgctccgcaagttttgctgcatcaggatcgttgatctcgacctgaaaaaaacatctttagcacatcttattgaatcatgtgcctgatgagcgcaaaaaatgatcccattatggctctcgaatttcaatttttccctggtaactctatactagacatgtttgtggcgtaggggagtagcagcagcagcacacacacacacacacacacacacacacacacacacacacacacaca | attttgacgtcacgataaatttttt | |||
Mapping_target | K09E9 | ||||
Type_of_mutation | Insertion | CACAC | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00044143 | |||
WBGene00201206 | |||||
Transcript | K09E9.12 | ||||
K09E9.4.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.4.1:c.91-194_91-193insGTGTG | ||||
Intron_number | 2/4 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6662 VarI5=CACAC | ||||
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_K09E9.5 | |||||
[20040130 db] this Allele was previously named snp_K09E9.5 | |||||
[20090224 db] original Wicks name : K09E9:17971..18917@196 Psnp=0.6662 VarI5=CACAC | |||||
[20090224 db] original Wicks id : yw07b04.s1@679,c,33 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |