WormBase Tree Display for Variation: WBVar00245542
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WBVar00245542 | Name | Public_name | WBVar00245542 | ||
---|---|---|---|---|---|
Other_name | snp_K08E4[1] | ||||
haw154601 | |||||
cewivar00209421 | |||||
CE40463:p.Tyr145= | |||||
K08E4.7.1:c.435T>C | |||||
HGVSg | CHROMOSOME_IV:g.12076302T>C | ||||
Sequence_details | SMap | S_parent | Sequence | K08E4 | |
Flanking_sequences | ccaaagtcaaggtgacaaaactcta | ggatatcgaaaaagaaagatgcttg | |||
Mapping_target | K08E4 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (12) | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00574466 | |||
Status | Live | ||||
Affects | Gene | WBGene00045036 | |||
Transcript | K08E4.7.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | K08E4.7.1:c.435T>C | ||||
HGVSp | CE40463:p.Tyr145= | ||||
cDNA_position | 455 | ||||
CDS_position | 435 | ||||
Protein_position | 145 | ||||
Exon_number | 3/5 | ||||
Codon_change | taT/taC | ||||
Amino_acid_change | Y | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9427 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_K08E4.1 | |||||
[20040130 db] this Allele was previously named snp_K08E4.1 | |||||
[20090224 db] original Wicks name : K08E4:22597..23536@323 Psnp=0.9427 VarS=CT | |||||
[20090224 db] original Wicks id : yy48d05.s1@269,c,59 | |||||
Method | SNP_Wicks |