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WormBase Tree Display for Variation: WBVar00245419

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Name Class

WBVar00245419NamePublic_nameWBVar00245419
Other_namesnp_K03H6[2]
haw149018
cewivar00201177
K03H6.5b.1:c.124-56G>A
K03H6.5a.1:c.124-56G>A
HGVSgCHROMOSOME_IV:g.1532453C>T
Sequence_detailsSMapS_parentSequenceK03H6
Flanking_sequencescaccacttgaacacttttttcttccccaaaaatcgaccccaatacatctt
Mapping_targetK03H6
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00568883
StatusLive
AffectsGeneWBGene00019370
TranscriptK03H6.5b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK03H6.5b.1:c.124-56G>A
Intron_number1/8
K03H6.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK03H6.5a.1:c.124-56G>A
Intron_number2/9
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9430 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_K03H6.2
[20040130 db] this Allele was previously named snp_K03H6.2
[20090224 db] original Wicks name : K03H6:21795..22761@246 Psnp=0.9430 VarS=CT
[20090224 db] original Wicks id : eam69h08.s1@180,t,62
[20090224 db] Snip-SNP
MethodSNP_Wicks