WormBase Tree Display for Variation: WBVar00245419
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WBVar00245419 | Name | Public_name | WBVar00245419 | ||
---|---|---|---|---|---|
Other_name | snp_K03H6[2] | ||||
haw149018 | |||||
cewivar00201177 | |||||
K03H6.5b.1:c.124-56G>A | |||||
K03H6.5a.1:c.124-56G>A | |||||
HGVSg | CHROMOSOME_IV:g.1532453C>T | ||||
Sequence_details | SMap | S_parent | Sequence | K03H6 | |
Flanking_sequences | caccacttgaacacttttttcttcc | ccaaaaatcgaccccaatacatctt | |||
Mapping_target | K03H6 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00568883 | |||
Status | Live | ||||
Affects | Gene | WBGene00019370 | |||
Transcript | K03H6.5b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K03H6.5b.1:c.124-56G>A | ||||
Intron_number | 1/8 | ||||
K03H6.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K03H6.5a.1:c.124-56G>A | ||||
Intron_number | 2/9 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9430 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_K03H6.2 | |||||
[20040130 db] this Allele was previously named snp_K03H6.2 | |||||
[20090224 db] original Wicks name : K03H6:21795..22761@246 Psnp=0.9430 VarS=CT | |||||
[20090224 db] original Wicks id : eam69h08.s1@180,t,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |