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WormBase Tree Display for Variation: WBVar00245386

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Name Class

WBVar00245386NamePublic_nameWBVar00245386
Other_namesnp_K01D12[4]
haw170043
cewivar00242287
K01D12.10.1:c.231G>A
CE42132:p.Gly77=
HGVSgCHROMOSOME_V:g.12406502G>A
Sequence_detailsSMapS_parentSequenceK01D12
Flanking_sequencesgttctggtactgctaccgtatctggacaccaactggaactgcttctgcaa
Mapping_targetK01D12
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00589908
StatusLive
AffectsGeneWBGene00010469
TranscriptK01D12.10.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScK01D12.10.1:c.231G>A
HGVSpCE42132:p.Gly77=
cDNA_position231
CDS_position231
Protein_position77
Exon_number2/4
Codon_changeggG/ggA
Amino_acid_changeG
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9427 VarS=AG
Enzymes. Bristol-specific: [Bsc107I,Bsc4I,Bse23I,BseLI,BsiYI,BslI,BsmFI,BsmYI,BspLU11III,BstOZ616I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_K01D12.4
[20040130 db] this Allele was previously named snp_K01D12.4
[20090224 db] original Wicks name : K01D12:29528..30473@668 Psnp=0.9427 VarS=AG
[20090224 db] original Wicks id : eam64f08.s1@206,a,59
[20090224 db] Snip-SNP
MethodSNP_Wicks