WormBase Tree Display for Variation: WBVar00245386
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WBVar00245386 | Name | Public_name | WBVar00245386 | ||
---|---|---|---|---|---|
Other_name | snp_K01D12[4] | ||||
haw170043 | |||||
cewivar00242287 | |||||
K01D12.10.1:c.231G>A | |||||
CE42132:p.Gly77= | |||||
HGVSg | CHROMOSOME_V:g.12406502G>A | ||||
Sequence_details | SMap | S_parent | Sequence | K01D12 | |
Flanking_sequences | gttctggtactgctaccgtatctgg | acaccaactggaactgcttctgcaa | |||
Mapping_target | K01D12 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00589908 | |||
Status | Live | ||||
Affects | Gene | WBGene00010469 | |||
Transcript | K01D12.10.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | K01D12.10.1:c.231G>A | ||||
HGVSp | CE42132:p.Gly77= | ||||
cDNA_position | 231 | ||||
CDS_position | 231 | ||||
Protein_position | 77 | ||||
Exon_number | 2/4 | ||||
Codon_change | ggG/ggA | ||||
Amino_acid_change | G | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9427 VarS=AG | ||||
Enzymes. Bristol-specific: [Bsc107I,Bsc4I,Bse23I,BseLI,BsiYI,BslI,BsmFI,BsmYI,BspLU11III,BstOZ616I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_K01D12.4 | |||||
[20040130 db] this Allele was previously named snp_K01D12.4 | |||||
[20090224 db] original Wicks name : K01D12:29528..30473@668 Psnp=0.9427 VarS=AG | |||||
[20090224 db] original Wicks id : eam64f08.s1@206,a,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |