WormBase Tree Display for Variation: WBVar00245383

WBVar00245383 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00245383
    Other_name: snp_K01D12[1]
      K01D12.3:n.268+960G>A
      K01D12.2:n.1762C>T
    HGVSg: CHROMOSOME_V:g.12382527G>A
  Sequence_details: SMap: S_parent: Sequence: K01D12
    Flanking_sequences: tgtccgtatttctccattgcatctg agaaaatccttcattgttgattcgc
    Mapping_target: K01D12
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00010462
      WBGene00010463
    Transcript: K01D12.2 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: K01D12.2:n.1762C>T
        cDNA_position: 1762
        Exon_number: 1/1
    Pseudogene: K01D12.3 VEP_consequence: intron_variant,non_coding_transcript_variant
        VEP_impact: MODIFIER
        HGVSc: K01D12.3:n.268+960G>A
        Intron_number: 2/6
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.4429 VarS=AG
    Enzymes. Bristol-specific: [Bco35I,BpmI,Bsp22I,Bsp28I,BspJ74I,GsuI,Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV,Uba1437I,Uba1444I]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_K01D12.1
    [20040130 db] this Allele was previously named snp_K01D12.1
    [20090224 db] original Wicks name : K01D12:5997..6888@224 Psnp=0.4429 VarS=AG
    [20090224 db] original Wicks id : yx30f08.s1@602,a,27
    [20090224 db] Snip-SNP
  Method: SNP_Wicks