WormBase Tree Display for Variation: WBVar00245342

WBVar00245342 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00245342
    Other_name: snp_H14N18[1]
      H14N18.4d.1:c.1249-45_1249-41del
      H14N18.4c.1:c.1339-45_1339-41del
      H14N18.4a.1:c.1363-45_1363-41del
      H14N18.4b.1:c.1273-45_1273-41del
    HGVSg: CHROMOSOME_V:g.8925313_8925317del
  Sequence_details: SMap: S_parent: Sequence: H14N18
    Flanking_sequences: ttagtattcataaaagtgttgaaac agttcagaatgatgaaaatatggaa
    Mapping_target: H14N18
    Type_of_mutation: Deletion: TGAAC
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00019204
    Transcript: H14N18.4d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H14N18.4d.1:c.1249-45_1249-41del
        Intron_number: 8/11
      H14N18.4b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H14N18.4b.1:c.1273-45_1273-41del
        Intron_number: 9/12
      H14N18.4a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H14N18.4a.1:c.1363-45_1363-41del
        Intron_number: 8/11
      H14N18.4c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H14N18.4c.1:c.1339-45_1339-41del
        Intron_number: 8/11
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.8888 VarD5=TGAAC
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_H14N18.1
    [20040130 db] this Allele was previously named snp_H14N18.1
    [20090224 db] original Wicks name : H14N18:2649..4207@552 Psnp=0.8888 VarD5=TGAAC
    [20090224 db] original Wicks id : yy49b05.s1@112,-,59 yy44b04.s1@483,-,33
    [20090224 db] Snip-SNP
  Method: SNP_Wicks