WormBase Tree Display for Variation: WBVar00245311

WBVar00245311 Name: Public_name: WBVar00245311
    Other_name: snp_H05L14[3]
      haw117935
      cewivar00167454
      H05L14.2b.1:c.374+235G>A
      H05L14.2c.1:c.332+235G>A
      H05L14.2a.1:c.374+235G>A
      H05L14.2e.1:c.374+235G>A
    HGVSg: CHROMOSOME_I:g.7985956G>A
  Sequence_details: SMap: S_parent: Sequence: H05L14
    Flanking_sequences: agccgtggaccgcaccttcggcgcg cccccgacttctgggactgaaaatt
    Mapping_target: H05L14
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          WGS_Yanai
          Million_mutation_project_reanalysis
    Laboratory: AX
    Person: WBPerson4037
    Analysis: SNP_Wicks
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01345860
        WBVar00537800
    Status: Live
  Affects: Gene: WBGene00010367
    Transcript: H05L14.2c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H05L14.2c.1:c.332+235G>A
        Intron_number: 5/13
      H05L14.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H05L14.2b.1:c.374+235G>A
        Intron_number: 3/12
      H05L14.2e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H05L14.2e.1:c.374+235G>A
        Intron_number: 3/12
      H05L14.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H05L14.2a.1:c.374+235G>A
        Intron_number: 5/14
  Reference: WBPaper00038208
    WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.6024 VarS=AG
    Enzymes. Bristol-specific: [AcaIV,AceI,AciI,AflI,AhaB1I,ApuI,Asp697I,Asp742I,Asp745I,AspBII,AspCII,AspDII,AspNI,AspS9I,AspTIII,AvaII,AvcI,AvrBI,Bac36I,Bal228I,Bal3006I,Bal475I,BamNxI,BavAII,BavBII,Bce22I,Bce71I,Bco33I,BcrI,BcuAI,BecAII,Bfi105I,Bfi458I,Bim19II,BliI,BluII,Bme18I,Bme216I,Bme361I,Bme46I,Bme74I,BsaEI,BsaRI,BsaSI,BscBI,BscQI,Bse126I,Bse54I,Bse9I,BseI,BseQI,BshAI,BshBI,BshCI,BshDI,BshEI,BshFI,BshI,BshKI,BsiAI,BsiDI,BsiHI,BsiZI,BsoFI,Bsp100I,Bsp1260I,Bsp1261I,Bsp128I,Bsp132I,Bsp133I,Bsp137I,Bsp1593I,Bsp1894I,Bsp2013I,Bsp211I,Bsp226I,Bsp2362I,Bsp23I,Bsp2500I,Bsp29I,Bsp44II,Bsp6I,Bsp71I,Bsp881I,BspBDG2I,BspBII,BspBRI,BspBSE18I,BspBake1I,BspCHE15I,BspF4I,BspF53I,BspGHA1I,BspH106II,BspJ105I,BspKI,BspLI,BspLRI,BspRI,BsrAI,BssCI,BssFI,BssI,BssXI,Bst4QI,BstCI,BstJI,Bsu1076I,Bsu1114I,Bsu54I,BsuRI,BteI,BthAI,BtiI,Cac824I,CauI,CcoP215I,CcoP216I,CcuI,CdiAI,Cfr13I,Cfr23I,Cfr33I,Cfr45I,Cfr46I,Cfr47I,Cfr4I,Cfr52I,Cfr54I,Cfr8I,CfrNI,CliI,ClmI,ClmII,CltI,Csp2I,Csp68KI,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,DsaII,DsaIV,EagMI,Eco196II,Eco201I,Eco39I,Eco47I,Eco47II,ErpI,FbrI,FdiI,FinSI,FmuI,Fnu4HI,FnuDI,Fsp4HI,FspMSI,FssI,GseI,GspAI,HaeIII,HgiBI,HgiCII,HgiEI,HgiHIII,HgiJI,HhgI,Hin5II,Hpy178VII,HpyF10V,HpyF26II,HpyF29I,HpyF33II,HpyF42I,HpyF44II,HpyF46V,HpyF49IV,HpyF53I,HpyF57I,HpyF63I,HpyF66I,HpyF69II,HpyF71II,HpyF72I,HpyF73I,HpyF73III,HpyF73IV,Hsp2I,ItaI,Kzo49I,LlaDII,MaeK81II,MchAII,MfoAI,MfoI,MjaII,MliI,MniI,MnnII,Msp24I,MspAI,MthBI,MthTI,NgoBV,NgoCII,NgoFVII,NgoGV,NgoNII,NgoPII,NgoSII,NgoTII,NlaDII,NlaI,NlaIV,Nli3877II,NliII,NmuAII,NmuEII,NmuSI,Nsp7121I,NspDII,NspGI,NspHII,NspIV,NspKI,NspLII,NspLKI,PaiI,PalI,Pde12I,Pde133I,Pfl19I,PflKI,PlaI,Ple214I,PolI,Pph1579I,Pph1773I,PpuI,PseI,Psp29I,PspI,PspN4I,PspPI,Rlu3I,SagI,Sau13I,Sau14I,Sau17I,Sau2I,Sau557I,Sau5I,Sau96I,SauBI,SbvI,SdyI,SelAI,SfaI,SfnI,Sgh1835I,SinAI,SinBI,SinCI,SinDI,SinEI,SinFI,SinGI,SinHI,SinI,SinJI,SmuEI,SplIII,SuaI,SulI,SynI,Taq52I,Tru28I,TruI,TseBI,TseI,Tsp132I,Tsp266I,Tsp273II,Tsp281I,Tsp301I,Tsp560I,TspZNI,TteAI,TtnI,Uba1097I,Uba1099I,Uba1131I,Uba1134I,Uba1140I,Uba1146I,Uba1147I,Uba1150I,Uba1152I,Uba1153I,Uba1155I,Uba1160I,Uba1164I,Uba1169I,Uba1174I,Uba1175I,Uba1176I,Uba1178I,Uba1179I,Uba1207I,Uba1208I,Uba1209I,Uba1210I,Uba1214I,Uba1223I,Uba1228I,Uba1230I,Uba1231I,Uba1235I,Uba1249I,Uba1272I,Uba1278I,Uba1288I,Uba1292I,Uba1293I,Uba1304I,Uba1305I,Uba1314I,Uba1319I,Uba1322I,Uba1336I,Uba1373I,Uba1377I,Uba1388I,Uba1392I,Uba1395I,Uba1408I,Uba1413I,Uba1418I,Uba1422I,Uba1429I,Uba1438I,Uba1445I,Uba1449I,Uba1450I,Uba48I,Uba54I,Uba61I,Uba62I,Uba9I,UnbI,Uth549I,Uth554I,Uth555I,Uth557I,Uur960I,Van91III,VchO66I,VchO85I,VchO90I,Vha1168I,VhaI,VniI,VpaK11AI,VpaK11BI,VpaK11CI,VpaK11DI,VpaK11I,VpaK13AI,VpaK15I,VpaK19AI,VpaK19BI,VpaK25I,VpaK65I,VpaK7AI,VpaK9AI,VpaKutAI,VpaKutBI,VpaKutJI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_H05L14.3
    [20040130 db] this Allele was previously named snp_H05L14.3
    [20090224 db] original Wicks name : H05L14:12322..13200@699 Psnp=0.6024 VarS=AG
    [20090224 db] original Wicks id : vm26e05.s1@105,a,30
    [20090224 db] Snip-SNP
  Method: SNP_Wicks