WormBase Tree Display for Variation: WBVar00245299

WBVar00245299 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00245299
    Other_name: snp_H05B21[1]
      CE34574:p.Phe27=
      H27D07.5.1:c.81C>T
    HGVSg: CHROMOSOME_V:g.2952122G>A
  Sequence_details: SMap: S_parent: Sequence: H05B21
    Flanking_sequences: gggtaacttactaaaatgttttctc aatttgcaaagtgattttgccgtcg
    Mapping_target: H05B21
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00005869
    Transcript: H27D07.5.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: H27D07.5.1:c.81C>T
        HGVSp: CE34574:p.Phe27=
        cDNA_position: 81
        CDS_position: 81
        Protein_position: 27
        Exon_number: 1/5
        Codon_change: ttC/ttT
        Amino_acid_change: F
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9268 VarS=AG
    Enzymes. Bristol-specific: [CviSIII,EsaBC3I,Hpy188III,Hpy26II,HpyCH4VI,HpyF14III,HpyF16I,HpyF16II,HpyF19III,HpyF22III,HpyF23I,HpyF24I,HpyF26III,HpyF30I,HpyF35I,HpyF40II,HpyF42IV,HpyF44IV,HpyF45I,HpyF49I,HpyF52I,HpyF59III,HpyF62II,HpyF64I,HpyF65II,HpyF66IV,HpyF71I,HpyF73II,HpyJP26II,HpyV,PpaAII,Taq20I,TaqI,Tbr51I,TfiA3I,TfiTok4A2I,TfiTok6A1I,TflI,Tsc4aI,Tsp32I,Tsp32II,Tsp358I,Tsp505I,Tsp510I,TspAK13D21I,TspAK16D24I,TspNI,TspVi4AI,TspVil3I,Tth24I,TthHB8I,TthRQI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_H05B21.1
    [20040130 db] this Allele was previously named snp_H05B21.1
    [20090224 db] original Wicks name : H05B21:1..829@141 Psnp=0.9268 VarS=AG
    [20090224 db] original Wicks id : yw14b03.s1@113,a,45
    [20090224 db] Snip-SNP
  Method: SNP_Wicks