WormBase Tree Display for Variation: WBVar00245213
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WBVar00245213 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245213 | |||
Other_name | snp_F57G8[3] | ||||
cewivar00478364 | |||||
F57G8.8:n.642-846A>G | |||||
HGVSg | CHROMOSOME_V:g.16322048T>C | ||||
Sequence_details | SMap | S_parent | Sequence | F57G8 | |
Flanking_sequences | cccatcgtggtgagacccttcgtgg | gagacccttcgtggtgagacccaaa | |||
Mapping_target | F57G8 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00005747 | |||
Pseudogene | F57G8.8 | VEP_consequence | intron_variant,non_coding_transcript_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F57G8.8:n.642-846A>G | ||||
Intron_number | 4/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8657 VarS=CT | ||||
Enzymes. Bristol-specific: [AsuHPI,HphI,NgoBVIII,NgoDVIII,NgoJVIII,NgoMVIII,SspD5I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F57G8.3 | |||||
[20040130 db] this Allele was previously named snp_F57G8.3 | |||||
[20090224 db] original Wicks name : F57G8:4557..5541@428 Psnp=0.8657 VarS=CT | |||||
[20090224 db] original Wicks id : eam54h07.s1@348,c,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |