WormBase Tree Display for Variation: WBVar00245174
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WBVar00245174 | Name | Public_name | WBVar00245174 | ||
---|---|---|---|---|---|
Other_name | snp_F56D3[2] | ||||
haw129882 | |||||
cewivar00183803 | |||||
F56D3.1.1:c.122-8A>T | |||||
HGVSg | CHROMOSOME_II:g.4146943A>T | ||||
Sequence_details | SMap | S_parent | Sequence | F56D3 | |
Flanking_sequences | ttttaacctaaaaactagcttcaca | tttccagacgtcggaaccattgatg | |||
Mapping_target | F56D3 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01370271 | |||
WBVar00549747 | |||||
Status | Live | ||||
Affects | Gene | WBGene00018969 | |||
Transcript | F56D3.1.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | F56D3.1.1:c.122-8A>T | ||||
Intron_number | 3/10 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.8962 VarS=AT | ||||
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F56D3.2 | |||||
[20040130 db] this Allele was previously named snp_F56D3.2 | |||||
[20090224 db] original Wicks name : F56D3:4948..6214@708 Psnp=0.8962 VarS=AT | |||||
[20090224 db] original Wicks id : yw17d02.s1@634,t,7 eam60e11.s1@285,t,44 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |