Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00245174

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00245174NamePublic_nameWBVar00245174
Other_namesnp_F56D3[2]
haw129882
cewivar00183803
F56D3.1.1:c.122-8A>T
HGVSgCHROMOSOME_II:g.4146943A>T
Sequence_detailsSMapS_parentSequenceF56D3
Flanking_sequencesttttaacctaaaaactagcttcacatttccagacgtcggaaccattgatg
Mapping_targetF56D3
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01370271
WBVar00549747
StatusLive
AffectsGeneWBGene00018969
TranscriptF56D3.1.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScF56D3.1.1:c.122-8A>T
Intron_number3/10
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.8962 VarS=AT
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F56D3.2
[20040130 db] this Allele was previously named snp_F56D3.2
[20090224 db] original Wicks name : F56D3:4948..6214@708 Psnp=0.8962 VarS=AT
[20090224 db] original Wicks id : yw17d02.s1@634,t,7 eam60e11.s1@285,t,44
[20090224 db] Snip-SNP
MethodSNP_Wicks