WormBase Tree Display for Variation: WBVar00245157
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WBVar00245157 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245157 | |||
Other_name | snp_F56C3[1] | ||||
cewivar00268675 | |||||
F56C3.3.1:c.126G>T | |||||
CE53195:p.Arg42= | |||||
HGVSg | CHROMOSOME_X:g.1358171C>A | ||||
Sequence_details | SMap | S_parent | Sequence | F56C3 | |
Flanking_sequences | tgtgaaaacccgttctactcacctc | cgatgattcaggctacactccacaa | |||
Mapping_target | F56C3 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00018940 | |||
Transcript | F56C3.3.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F56C3.3.1:c.126G>T | ||||
HGVSp | CE53195:p.Arg42= | ||||
cDNA_position | 126 | ||||
CDS_position | 126 | ||||
Protein_position | 42 | ||||
Exon_number | 2/3 | ||||
Codon_change | cgG/cgT | ||||
Amino_acid_change | R | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8657 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F56C3.1 | |||||
[20040130 db] this Allele was previously named snp_F56C3.1 | |||||
[20090224 db] original Wicks name : F56C3:1325..2219@683 Psnp=0.8657 VarS=AC | |||||
[20090224 db] original Wicks id : vl29g11.s1@139,a,38 | |||||
Method | SNP_Wicks |