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WormBase Tree Display for Variation: WBVar00245157

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Name Class

WBVar00245157EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00245157
Other_namesnp_F56C3[1]
cewivar00268675
F56C3.3.1:c.126G>T
CE53195:p.Arg42=
HGVSgCHROMOSOME_X:g.1358171C>A
Sequence_detailsSMapS_parentSequenceF56C3
Flanking_sequencestgtgaaaacccgttctactcacctccgatgattcaggctacactccacaa
Mapping_targetF56C3
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00006625From_analysisMillion_mutation_project_reanalysis
WBStrain00006640From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00018940
TranscriptF56C3.3.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF56C3.3.1:c.126G>T
HGVSpCE53195:p.Arg42=
cDNA_position126
CDS_position126
Protein_position42
Exon_number2/3
Codon_changecgG/cgT
Amino_acid_changeR
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8657 VarS=AC
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F56C3.1
[20040130 db] this Allele was previously named snp_F56C3.1
[20090224 db] original Wicks name : F56C3:1325..2219@683 Psnp=0.8657 VarS=AC
[20090224 db] original Wicks id : vl29g11.s1@139,a,38
MethodSNP_Wicks