WormBase Tree Display for Variation: WBVar00245137
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WBVar00245137 | Name | Public_name | WBVar00245137 | ||
---|---|---|---|---|---|
Other_name | snp_F55G11[2] | ||||
haw155034 | |||||
cewivar00125019 | |||||
CE44453:p.Pro73Ser | |||||
F55G11.10.1:c.217C>T | |||||
HGVSg | CHROMOSOME_IV:g.12949035C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F55G11 | |
Flanking_sequences | acaaaacgaatgtggaggacctcag | cgaactacagtggtgcaggtggtac | |||
Mapping_target | F55G11 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00574899 | |||
Status | Live | ||||
Affects | Gene | WBGene00010129 | |||
Transcript | F55G11.10.1 | VEP_consequence | missense_variant | ||
VEP_impact | MODERATE | ||||
HGVSc | F55G11.10.1:c.217C>T | ||||
HGVSp | CE44453:p.Pro73Ser | ||||
cDNA_position | 217 | ||||
CDS_position | 217 | ||||
Protein_position | 73 | ||||
Exon_number | 2/6 | ||||
Codon_change | Ccg/Tcg | ||||
Amino_acid_change | P/S | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8657 VarS=CT | ||||
Enzymes. Bristol-specific: [AbeI,BbvCI,Bpu10I,BpuDI,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F55G11.2 | |||||
[20040130 db] this Allele was previously named snp_F55G11.2 | |||||
[20090224 db] original Wicks name : F55G11:2802..3626@586 Psnp=0.8657 VarS=CT | |||||
[20090224 db] original Wicks id : vl31f06.s1@511,t,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |