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WormBase Tree Display for Variation: WBVar00245137

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Name Class

WBVar00245137NamePublic_nameWBVar00245137
Other_namesnp_F55G11[2]
haw155034
cewivar00125019
CE44453:p.Pro73Ser
F55G11.10.1:c.217C>T
HGVSgCHROMOSOME_IV:g.12949035C>T
Sequence_detailsSMapS_parentSequenceF55G11
Flanking_sequencesacaaaacgaatgtggaggacctcagcgaactacagtggtgcaggtggtac
Mapping_targetF55G11
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00574899
StatusLive
AffectsGeneWBGene00010129
TranscriptF55G11.10.1VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScF55G11.10.1:c.217C>T
HGVSpCE44453:p.Pro73Ser
cDNA_position217
CDS_position217
Protein_position73
Exon_number2/6
Codon_changeCcg/Tcg
Amino_acid_changeP/S
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8657 VarS=CT
Enzymes. Bristol-specific: [AbeI,BbvCI,Bpu10I,BpuDI,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F55G11.2
[20040130 db] this Allele was previously named snp_F55G11.2
[20090224 db] original Wicks name : F55G11:2802..3626@586 Psnp=0.8657 VarS=CT
[20090224 db] original Wicks id : vl31f06.s1@511,t,38
[20090224 db] Snip-SNP
MethodSNP_Wicks