WormBase Tree Display for Variation: WBVar00245073
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WBVar00245073 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00245073 | |||
Other_name | snp_F54E2[6] | ||||
cewivar00225904 | |||||
F54E2.3f.1:c.1398T>C | |||||
CE49469:p.Arg466= | |||||
F54E2.3h.1:c.1398T>C | |||||
CE49179:p.Arg466= | |||||
F54E2.3g.1:c.1398T>C | |||||
F54E2.3e.1:c.1398T>C | |||||
CE49363:p.Arg466= | |||||
CE38607:p.Arg466= | |||||
HGVSg | CHROMOSOME_V:g.2800833A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F54E2 | |
Flanking_sequences | atcgcttctcgtgctccaactgccg | cgctcctcttccaatcgctcgcgtt | |||
Mapping_target | F54E2 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00004130 | |||
Transcript | F54E2.3h.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F54E2.3h.1:c.1398T>C | ||||
HGVSp | CE49363:p.Arg466= | ||||
cDNA_position | 1398 | ||||
CDS_position | 1398 | ||||
Protein_position | 466 | ||||
Exon_number | 7/28 | ||||
Codon_change | cgT/cgC | ||||
Amino_acid_change | R | ||||
F54E2.3f.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E2.3f.1:c.1398T>C | ||||
HGVSp | CE49179:p.Arg466= | ||||
cDNA_position | 1398 | ||||
CDS_position | 1398 | ||||
Protein_position | 466 | ||||
Exon_number | 7/26 | ||||
Codon_change | cgT/cgC | ||||
Amino_acid_change | R | ||||
F54E2.3e.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E2.3e.1:c.1398T>C | ||||
HGVSp | CE38607:p.Arg466= | ||||
cDNA_position | 1398 | ||||
CDS_position | 1398 | ||||
Protein_position | 466 | ||||
Exon_number | 7/28 | ||||
Codon_change | cgT/cgC | ||||
Amino_acid_change | R | ||||
F54E2.3g.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F54E2.3g.1:c.1398T>C | ||||
HGVSp | CE49469:p.Arg466= | ||||
cDNA_position | 1398 | ||||
CDS_position | 1398 | ||||
Protein_position | 466 | ||||
Exon_number | 7/29 | ||||
Codon_change | cgT/cgC | ||||
Amino_acid_change | R | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6951 VarS=AG | ||||
Enzymes. Bristol-specific: [HgaI,Hpy99I,HpyF61III]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F54E2.6 | |||||
[20040130 db] this Allele was previously named snp_F54E2.6 | |||||
[20090224 db] original Wicks name : F54E2:17539..18513@500 Psnp=0.6951 VarS=AG | |||||
[20090224 db] original Wicks id : eam47e02.s1@427,g,32 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |