Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00245073

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00245073EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00245073
Other_namesnp_F54E2[6]
cewivar00225904
F54E2.3f.1:c.1398T>C
CE49469:p.Arg466=
F54E2.3h.1:c.1398T>C
CE49179:p.Arg466=
F54E2.3g.1:c.1398T>C
F54E2.3e.1:c.1398T>C
CE49363:p.Arg466=
CE38607:p.Arg466=
HGVSgCHROMOSOME_V:g.2800833A>G
Sequence_detailsSMapS_parentSequenceF54E2
Flanking_sequencesatcgcttctcgtgctccaactgccgcgctcctcttccaatcgctcgcgtt
Mapping_targetF54E2
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00004130
TranscriptF54E2.3h.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF54E2.3h.1:c.1398T>C
HGVSpCE49363:p.Arg466=
cDNA_position1398
CDS_position1398
Protein_position466
Exon_number7/28
Codon_changecgT/cgC
Amino_acid_changeR
F54E2.3f.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF54E2.3f.1:c.1398T>C
HGVSpCE49179:p.Arg466=
cDNA_position1398
CDS_position1398
Protein_position466
Exon_number7/26
Codon_changecgT/cgC
Amino_acid_changeR
F54E2.3e.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF54E2.3e.1:c.1398T>C
HGVSpCE38607:p.Arg466=
cDNA_position1398
CDS_position1398
Protein_position466
Exon_number7/28
Codon_changecgT/cgC
Amino_acid_changeR
F54E2.3g.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF54E2.3g.1:c.1398T>C
HGVSpCE49469:p.Arg466=
cDNA_position1398
CDS_position1398
Protein_position466
Exon_number7/29
Codon_changecgT/cgC
Amino_acid_changeR
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.6951 VarS=AG
Enzymes. Bristol-specific: [HgaI,Hpy99I,HpyF61III]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F54E2.6
[20040130 db] this Allele was previously named snp_F54E2.6
[20090224 db] original Wicks name : F54E2:17539..18513@500 Psnp=0.6951 VarS=AG
[20090224 db] original Wicks id : eam47e02.s1@427,g,32
[20090224 db] Snip-SNP
MethodSNP_Wicks