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WormBase Tree Display for Variation: WBVar00245044

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Name Class

WBVar00245044NamePublic_nameWBVar00245044
Other_namesnp_F54B8[1]
haw172330
cewivar00247323
F54B8.2.1:c.229T>A
CE16104:p.Leu77Met
HGVSgCHROMOSOME_V:g.15812510T>A
Sequence_detailsSMapS_parentSequenceF54B8
Flanking_sequencesggttgcagtttctacctcggatttttgagaaaattcccattcgtatatca
Mapping_targetF54B8
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00592195
StatusLive
AffectsGeneWBGene00010017
TranscriptF54B8.2.1 (12)
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8928 VarS=AT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F54B8.1
[20040130 db] this Allele was previously named snp_F54B8.1
[20090224 db] original Wicks name : F54B8:1436..2422@564 Psnp=0.8928 VarS=AT
[20090224 db] original Wicks id : eam54e06.s1@344,a,33 eam54f12.s1@350,a,47
MethodSNP_Wicks