WormBase Tree Display for Variation: WBVar00245029

WBVar00245029 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00245029
    Other_name: snp_F53H1[1]
      F53H1.1c.1:c.1132-19del
      F53H1.1d.1:c.1132-19del
      F53H1.1b.1:c.1543-19del
      F53H1.1a.1:c.1543-19del
    HGVSg: CHROMOSOME_IV:g.1303358del
  Sequence_details: SMap: S_parent: Sequence: F53H1
    Flanking_sequences: caccgacctgaaaaattagggaaaa ttagattaaaaatcgtttgaaacgg
    Mapping_target: F53H1
    Type_of_mutation: Deletion: A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00018776
    Transcript: F53H1.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F53H1.1b.1:c.1543-19del
        Intron_number: 5/9
      F53H1.1d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F53H1.1d.1:c.1132-19del
        Intron_number: 4/7
      F53H1.1c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F53H1.1c.1:c.1132-19del
        Intron_number: 4/9
      F53H1.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F53H1.1a.1:c.1543-19del
        Intron_number: 6/12
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9174 VarD1=A
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_F53H1.1
    [20040130 db] this Allele was previously named snp_F53H1.1
    [20090224 db] original Wicks name : F53H1:6184..6749@159 Psnp=0.9174 VarD1=A
    [20090224 db] original Wicks id : hq64d01.s1@353,-,51
  Method: SNP_Wicks