WormBase Tree Display for Variation: WBVar00245018

WBVar00245018 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00245018
    Other_name: snp_F53G12[4]
      F53G12.7a.1:c.177+181_177+185del
    HGVSg: CHROMOSOME_I:g.116096_116100del
  Sequence_details: SMap: S_parent: Sequence: F53G12
    Flanking_sequences: aaaaaaaaaccgcaaacctgtcatg tcgatgttatccctacgctaaatgt
    Mapping_target: F53G12
    Type_of_mutation: Deletion: GCGCA
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00000622
    Transcript: F53G12.7a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F53G12.7a.1:c.177+181_177+185del
        Intron_number: 2/5
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.8227 VarD5=GCGCA
    Enzymes. Bristol-specific: [AspLEI,BcaI,BscAI,BscUI,BsmNI,BspLAI,BspST5I,CcoP95I,CfoI,CjeP338II,Csp1470I,FnuDIII,HhaI,Hin6I,Hin7I,HinGUI,HinP1I,HinS1I,HinS2I,Hpy99III,HpyF10I,HsoI,HspAI,MnnIV,NgoEII,PhaI,SciNI,SfaNI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_F53G12.4
    [20040130 db] this Allele was previously named snp_F53G12.4
    [20090224 db] original Wicks name : F53G12:8146..8873@275 Psnp=0.8227 VarD5=GCGCA
    [20090224 db] original Wicks id : vl23e09.s1@196,-,38
    [20090224 db] Snip-SNP
  Method: SNP_Wicks