WormBase Tree Display for Variation: WBVar00245007
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WBVar00245007 | Name | Public_name | WBVar00245007 | ||
---|---|---|---|---|---|
Other_name | snp_F53E2[1] | ||||
haw161258 | |||||
cewivar00222137 | |||||
F53E2.1a.1:c.369-4C>T | |||||
HGVSg | CHROMOSOME_V:g.1468935C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F53E2 | |
Flanking_sequences | cttgaacacataaatctcaaaaatt | cagacgcgctgctttccgcatcggc | |||
Mapping_target | F53E2 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (12) | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00581123 | |||
Status | Live | ||||
Affects | Gene | WBGene00018757 | |||
Transcript | F53E2.1a.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | F53E2.1a.1:c.369-4C>T | ||||
Intron_number | 2/5 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8929 VarS=CT | ||||
Enzymes. Bristol-specific: [Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F53E2.1 | |||||
[20040130 db] this Allele was previously named snp_F53E2.1 | |||||
[20090224 db] original Wicks name : F53E2:1..881@94 Psnp=0.8929 VarS=CT | |||||
[20090224 db] original Wicks id : eam45b08.s2@339,t,47 eam45b08.s1@341,t,29 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |