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WormBase Tree Display for Variation: WBVar00245007

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Name Class

WBVar00245007NamePublic_nameWBVar00245007
Other_namesnp_F53E2[1]
haw161258
cewivar00222137
F53E2.1a.1:c.369-4C>T
HGVSgCHROMOSOME_V:g.1468935C>T
Sequence_detailsSMapS_parentSequenceF53E2
Flanking_sequencescttgaacacataaatctcaaaaattcagacgcgctgctttccgcatcggc
Mapping_targetF53E2
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (12)
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00581123
StatusLive
AffectsGeneWBGene00018757
TranscriptF53E2.1a.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScF53E2.1a.1:c.369-4C>T
Intron_number2/5
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8929 VarS=CT
Enzymes. Bristol-specific: [Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F53E2.1
[20040130 db] this Allele was previously named snp_F53E2.1
[20090224 db] original Wicks name : F53E2:1..881@94 Psnp=0.8929 VarS=CT
[20090224 db] original Wicks id : eam45b08.s2@339,t,47 eam45b08.s1@341,t,29
[20090224 db] Snip-SNP
MethodSNP_Wicks