WormBase Tree Display for Variation: WBVar00244997
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WBVar00244997 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244997 | |||
Other_name | snp_F53B8[4] | ||||
ZK1151.1c.1:c.103+816G>A | |||||
ZK1151.1b.1:c.545-1906G>A | |||||
ZK1151.1d.1:c.103+816G>A | |||||
ZK1151.1j.1:c.103+816G>A | |||||
ZK1151.1a.1:c.914-1906G>A | |||||
ZK1151.1e.1:c.103+816G>A | |||||
ZK1151.1f.1:c.103+816G>A | |||||
ZK1151.1k.1:c.103+816G>A | |||||
ZK1151.1h.1:c.103+816G>A | |||||
HGVSg | CHROMOSOME_I:g.11791148C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F53B8 | |
Flanking_sequences | gccgtgactagaccccccggccctt | tagcacgtcaacattgagttcctct | |||
Mapping_target | F53B8 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00006876 | |||
Transcript | ZK1151.1e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1e.1:c.103+816G>A | ||||
Intron_number | 2/16 | ||||
ZK1151.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1b.1:c.545-1906G>A | ||||
Intron_number | 4/19 | ||||
ZK1151.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1f.1:c.103+816G>A | ||||
Intron_number | 1/15 | ||||
ZK1151.1h.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1h.1:c.103+816G>A | ||||
Intron_number | 1/16 | ||||
ZK1151.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1c.1:c.103+816G>A | ||||
Intron_number | 2/31 | ||||
ZK1151.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1a.1:c.914-1906G>A | ||||
Intron_number | 6/21 | ||||
ZK1151.1k.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1k.1:c.103+816G>A | ||||
Intron_number | 1/27 | ||||
ZK1151.1j.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1j.1:c.103+816G>A | ||||
Intron_number | 1/29 | ||||
ZK1151.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1151.1d.1:c.103+816G>A | ||||
Intron_number | 1/16 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9391 VarS=CT | ||||
Enzymes. Bristol-specific: [BfaI,FgoI,FisI,MaeI,MjaI,MthFI,MthZI,Rma485I,Rma486I,Rma490I,Rma495I,Rma496I,Rma497I,Rma500I,Rma501I,Rma503I,Rma506I,Rma509I,Rma510I,Rma515I,Rma516I,Rma517I,Rma518I,Rma519I,Rma522I,RmaI,XspI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F53B8.4 | |||||
[20040130 db] this Allele was previously named snp_F53B8.4 | |||||
[20090224 db] original Wicks name : F53B8:14602..16350@421 Psnp=0.9391 VarS=CT | |||||
[20090224 db] original Wicks id : eam37c04.s1@453,t,51 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |