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WormBase Tree Display for Variation: WBVar00244997

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Name Class

WBVar00244997EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244997
Other_namesnp_F53B8[4]
ZK1151.1c.1:c.103+816G>A
ZK1151.1b.1:c.545-1906G>A
ZK1151.1d.1:c.103+816G>A
ZK1151.1j.1:c.103+816G>A
ZK1151.1a.1:c.914-1906G>A
ZK1151.1e.1:c.103+816G>A
ZK1151.1f.1:c.103+816G>A
ZK1151.1k.1:c.103+816G>A
ZK1151.1h.1:c.103+816G>A
HGVSgCHROMOSOME_I:g.11791148C>T
Sequence_detailsSMapS_parentSequenceF53B8
Flanking_sequencesgccgtgactagaccccccggccctttagcacgtcaacattgagttcctct
Mapping_targetF53B8
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00006876
TranscriptZK1151.1e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1e.1:c.103+816G>A
Intron_number2/16
ZK1151.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1b.1:c.545-1906G>A
Intron_number4/19
ZK1151.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1f.1:c.103+816G>A
Intron_number1/15
ZK1151.1h.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1h.1:c.103+816G>A
Intron_number1/16
ZK1151.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1c.1:c.103+816G>A
Intron_number2/31
ZK1151.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1a.1:c.914-1906G>A
Intron_number6/21
ZK1151.1k.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1k.1:c.103+816G>A
Intron_number1/27
ZK1151.1j.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1j.1:c.103+816G>A
Intron_number1/29
ZK1151.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK1151.1d.1:c.103+816G>A
Intron_number1/16
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9391 VarS=CT
Enzymes. Bristol-specific: [BfaI,FgoI,FisI,MaeI,MjaI,MthFI,MthZI,Rma485I,Rma486I,Rma490I,Rma495I,Rma496I,Rma497I,Rma500I,Rma501I,Rma503I,Rma506I,Rma509I,Rma510I,Rma515I,Rma516I,Rma517I,Rma518I,Rma519I,Rma522I,RmaI,XspI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F53B8.4
[20040130 db] this Allele was previously named snp_F53B8.4
[20090224 db] original Wicks name : F53B8:14602..16350@421 Psnp=0.9391 VarS=CT
[20090224 db] original Wicks id : eam37c04.s1@453,t,51
[20090224 db] Snip-SNP
MethodSNP_Wicks