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WormBase Tree Display for Variation: WBVar00244959

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Name Class

WBVar00244959EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244959
Other_namesnp_F52E4[3]
cewivar00271529
F52E4.1a.1:c.*23C>A
HGVSgCHROMOSOME_X:g.3092234C>A
Sequence_detailsSMapS_parentSequenceF52E4
Flanking_sequencestaaatttccagcactacccactccgcttaatccatactattatgttgcca
Mapping_targetF52E4
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00022886From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00018701
TranscriptF52E4.1a.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScF52E4.1a.1:c.*23C>A
cDNA_position1644
Exon_number6/6
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.7349 VarS=AC
Enzymes. Bristol-specific: [AciI,BpuCI,EciI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F52E4.3
[20040130 db] this Allele was previously named snp_F52E4.3
[20090224 db] original Wicks name : F52E4:21895..22653@562 Psnp=0.7349 VarS=AC
[20090224 db] original Wicks id : yy55d03.s1@513,a,33
[20090224 db] Snip-SNP
MethodSNP_Wicks