WormBase Tree Display for Variation: WBVar00244959
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WBVar00244959 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244959 | |||
Other_name | snp_F52E4[3] | ||||
cewivar00271529 | |||||
F52E4.1a.1:c.*23C>A | |||||
HGVSg | CHROMOSOME_X:g.3092234C>A | ||||
Sequence_details | SMap | S_parent | Sequence | F52E4 | |
Flanking_sequences | taaatttccagcactacccactccg | cttaatccatactattatgttgcca | |||
Mapping_target | F52E4 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00018701 | |||
Transcript | F52E4.1a.1 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F52E4.1a.1:c.*23C>A | ||||
cDNA_position | 1644 | ||||
Exon_number | 6/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.7349 VarS=AC | ||||
Enzymes. Bristol-specific: [AciI,BpuCI,EciI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F52E4.3 | |||||
[20040130 db] this Allele was previously named snp_F52E4.3 | |||||
[20090224 db] original Wicks name : F52E4:21895..22653@562 Psnp=0.7349 VarS=AC | |||||
[20090224 db] original Wicks id : yy55d03.s1@513,a,33 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |