WormBase Tree Display for Variation: WBVar00244951
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| WBVar00244951 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00244951 | |||
| Other_name | snp_F52C12[4] | ||||
| F52C12.4d.1:c.196-113_196-112del | |||||
| F52C12.4c.1:c.196-113_196-112del | |||||
| F52C12.4b.1:c.196-113_196-112del | |||||
| F52C12.4g.1:c.196-113_196-112del | |||||
| F52C12.4a.1:c.196-113_196-112del | |||||
| F52C12.4e.1:c.196-113_196-112del | |||||
| F52C12.4h.1:c.196-113_196-112del | |||||
| F52C12.4f.1:c.196-113_196-112del | |||||
| HGVSg | CHROMOSOME_IV:g.1925900_1925901del | ||||
| Sequence_details | SMap | S_parent | Sequence | F52C12 | |
| Flanking_sequences | aattttcaatttttaagcaaaaaaa | atctttttttgcttaaaattttcaa | |||
| Mapping_target | F52C12 | ||||
| Type_of_mutation | Deletion | AA | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00018681 | |||
| Transcript | F52C12.4d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4d.1:c.196-113_196-112del | ||||
| Intron_number | 2/21 | ||||
| F52C12.4h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4h.1:c.196-113_196-112del | ||||
| Intron_number | 2/21 | ||||
| F52C12.4g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4g.1:c.196-113_196-112del | ||||
| Intron_number | 3/23 | ||||
| F52C12.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4c.1:c.196-113_196-112del | ||||
| Intron_number | 2/21 | ||||
| F52C12.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4f.1:c.196-113_196-112del | ||||
| Intron_number | 2/20 | ||||
| F52C12.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4b.1:c.196-113_196-112del | ||||
| Intron_number | 3/22 | ||||
| F52C12.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4a.1:c.196-113_196-112del | ||||
| Intron_number | 2/21 | ||||
| F52C12.4e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C12.4e.1:c.196-113_196-112del | ||||
| Intron_number | 3/22 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9226 VarD2=AA | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_F52C12.4 | |||||
| [20040130 db] this Allele was previously named snp_F52C12.4 | |||||
| [20090224 db] original Wicks name : F52C12:7088..8058@848 Psnp=0.9226 VarD2=AA | |||||
| [20090224 db] original Wicks id : eam69g01.s1@56,-,62 | |||||
| Method | SNP_Wicks |
