WormBase Tree Display for Variation: WBVar00244822
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| WBVar00244822 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00244822 | |||
| Other_name | snp_F45E4[1] | ||||
| cewivar00207632 | |||||
| F45E4.15:n.174T>C | |||||
| F45E4.3d.1:c.4206+399A>G | |||||
| F45E4.3c.1:c.4206+399A>G | |||||
| F45E4.3b.1:c.23046+399A>G | |||||
| F45E4.3a.1:c.23046+399A>G | |||||
| HGVSg | CHROMOSOME_IV:g.7619437A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F45E4 | |
| Flanking_sequences | agagaaaaagagttagtatgtctga | tctctcaatattcatctaatccctt | |||
| Mapping_target | F45E4 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018468 | |||
| WBGene00195365 | |||||
| Transcript | F45E4.3c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E4.3c.1:c.4206+399A>G | ||||
| Intron_number | 17/17 | ||||
| F45E4.3d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E4.3d.1:c.4206+399A>G | ||||
| Intron_number | 17/24 | ||||
| F45E4.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E4.3b.1:c.23046+399A>G | ||||
| Intron_number | 32/32 | ||||
| F45E4.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E4.3a.1:c.23046+399A>G | ||||
| Intron_number | 32/40 | ||||
| F45E4.15 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F45E4.15:n.174T>C | ||||
| cDNA_position | 174 | ||||
| Exon_number | 1/1 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9407 VarS=AG | ||||
| Enzymes. Bristol-specific: [TfiI]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_F45E4.1 | |||||
| [20040130 db] this Allele was previously named snp_F45E4.1 | |||||
| [20090224 db] original Wicks name : F45E4:12468..13370@517 Psnp=0.9407 VarS=AG | |||||
| [20090224 db] original Wicks id : yy45c08.s1@471,g,53 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
