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WormBase Tree Display for Variation: WBVar00244728

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Name Class

WBVar00244728EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244728
Other_namesnp_F42A9[1]
F42A9.6c.1:c.-20dup
F42A9.6a.2:c.-20dup
F42A9.6c.2:c.-20dup
F42A9.6a.3:c.-20dup
F42A9.6a.1:c.-20dup
CE46421:p.Lys65GlnfsTer4
F42A9.6b.1:c.191dup
HGVSgCHROMOSOME_IV:g.8609559dup
Sequence_detailsSMapS_parentSequenceF42A9
Flanking_sequencesgcggatttacgtgttttcaggttttcaagaaaaatgatagatacatgcta
Mapping_targetF42A9
Type_of_mutationInsertionT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00018335
TranscriptF42A9.6c.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42A9.6c.1:c.-20dup
cDNA_position193-194
Exon_number2/7
F42A9.6a.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42A9.6a.1:c.-20dup
cDNA_position210-211
Exon_number2/8
F42A9.6b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF42A9.6b.1:c.191dup
HGVSpCE46421:p.Lys65GlnfsTer4
cDNA_position210-211
CDS_position191-192
Protein_position64
Exon_number3/7
Codon_changettc/ttTc
Amino_acid_changeF/FX
F42A9.6c.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42A9.6c.2:c.-20dup
cDNA_position136-137
Exon_number1/6
F42A9.6a.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42A9.6a.2:c.-20dup
cDNA_position189-190
Exon_number2/8
F42A9.6a.3VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42A9.6a.3:c.-20dup
cDNA_position143-144
Exon_number1/7
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.4688 VarI1=T
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F42A9.1
[20040130 db] this Allele was previously named snp_F42A9.1
[20090224 db] original Wicks name : F42A9:3775..4671@246 Psnp=0.4688 VarI1=T
[20090224 db] original Wicks id : vm25c12.s1@178,t,29
MethodSNP_Wicks