WormBase Tree Display for Variation: WBVar00244728
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WBVar00244728 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244728 | |||
Other_name | snp_F42A9[1] | ||||
F42A9.6c.1:c.-20dup | |||||
F42A9.6a.2:c.-20dup | |||||
F42A9.6c.2:c.-20dup | |||||
F42A9.6a.3:c.-20dup | |||||
F42A9.6a.1:c.-20dup | |||||
CE46421:p.Lys65GlnfsTer4 | |||||
F42A9.6b.1:c.191dup | |||||
HGVSg | CHROMOSOME_IV:g.8609559dup | ||||
Sequence_details | SMap | S_parent | Sequence | F42A9 | |
Flanking_sequences | gcggatttacgtgttttcaggtttt | caagaaaaatgatagatacatgcta | |||
Mapping_target | F42A9 | ||||
Type_of_mutation | Insertion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00018335 | |||
Transcript | F42A9.6c.1 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F42A9.6c.1:c.-20dup | ||||
cDNA_position | 193-194 | ||||
Exon_number | 2/7 | ||||
F42A9.6a.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42A9.6a.1:c.-20dup | ||||
cDNA_position | 210-211 | ||||
Exon_number | 2/8 | ||||
F42A9.6b.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F42A9.6b.1:c.191dup | ||||
HGVSp | CE46421:p.Lys65GlnfsTer4 | ||||
cDNA_position | 210-211 | ||||
CDS_position | 191-192 | ||||
Protein_position | 64 | ||||
Exon_number | 3/7 | ||||
Codon_change | ttc/ttTc | ||||
Amino_acid_change | F/FX | ||||
F42A9.6c.2 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42A9.6c.2:c.-20dup | ||||
cDNA_position | 136-137 | ||||
Exon_number | 1/6 | ||||
F42A9.6a.2 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42A9.6a.2:c.-20dup | ||||
cDNA_position | 189-190 | ||||
Exon_number | 2/8 | ||||
F42A9.6a.3 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42A9.6a.3:c.-20dup | ||||
cDNA_position | 143-144 | ||||
Exon_number | 1/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.4688 VarI1=T | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F42A9.1 | |||||
[20040130 db] this Allele was previously named snp_F42A9.1 | |||||
[20090224 db] original Wicks name : F42A9:3775..4671@246 Psnp=0.4688 VarI1=T | |||||
[20090224 db] original Wicks id : vm25c12.s1@178,t,29 | |||||
Method | SNP_Wicks |