WormBase Tree Display for Variation: WBVar00244727

WBVar00244727 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00244727
    Other_name: snp_F42A8[1]
      F42A8.1.1:c.1068_1069del
      CE01578:p.Arg357GlufsTer6
    HGVSg: CHROMOSOME_II:g.9341602_9341603del
  Sequence_details: SMap: S_parent: Sequence: F42A8
    Flanking_sequences: tcgtacttaagtccagacgtattcc tccaactgtgccacatcgaagatca
    Mapping_target: F42A8
    Type_of_mutation: Deletion: TT
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00009626
    Transcript: F42A8.1.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: F42A8.1.1:c.1068_1069del
        HGVSp: CE01578:p.Arg357GlufsTer6
        cDNA_position: 1093-1094
        CDS_position: 1068-1069
        Protein_position: 356-357
        Exon_number: 8/9
        Codon_change: gaAAgg/gagg
        Amino_acid_change: ER/EX
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.7066 VarD2=TT
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_F42A8.1
    [20040130 db] this Allele was previously named snp_F42A8.1
    [20090224 db] original Wicks name : F42A8:404..1436@750 Psnp=0.7066 VarD2=TT
    [20090224 db] original Wicks id : vl20f01.s1@246,-,34
    [20090224 db] Snip-SNP
  Method: SNP_Wicks