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WormBase Tree Display for Variation: WBVar00244670

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Name Class

WBVar00244670EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00244670
Other_namesnp_F40C5[1]
CE42247:p.Leu18=
F40C5.1a.1:c.54T>A
HGVSgCHROMOSOME_V:g.3572766T>A
Sequence_detailsSMapS_parentSequenceF40C5
Flanking_sequencestgacactttttgttctattatcgcttattttgtttccagacggtttaatg
Mapping_targetF40C5
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00018228
TranscriptF40C5.1a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF40C5.1a.1:c.54T>A
HGVSpCE42247:p.Leu18=
cDNA_position59
CDS_position54
Protein_position18
Exon_number2/8
Codon_changectT/ctA
Amino_acid_changeL
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8928 VarS=AT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F40C5.1
[20040130 db] this Allele was previously named snp_F40C5.1
[20090224 db] original Wicks name : F40C5:6963..7983@514 Psnp=0.8928 VarS=AT
[20090224 db] original Wicks id : eam53e12.s1@439,a,34 eam53e12.s2@444,a,62
MethodSNP_Wicks