WormBase Tree Display for Variation: WBVar00244670
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WBVar00244670 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244670 | |||
Other_name | snp_F40C5[1] | ||||
CE42247:p.Leu18= | |||||
F40C5.1a.1:c.54T>A | |||||
HGVSg | CHROMOSOME_V:g.3572766T>A | ||||
Sequence_details | SMap | S_parent | Sequence | F40C5 | |
Flanking_sequences | tgacactttttgttctattatcgct | tattttgtttccagacggtttaatg | |||
Mapping_target | F40C5 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00018228 | |||
Transcript | F40C5.1a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F40C5.1a.1:c.54T>A | ||||
HGVSp | CE42247:p.Leu18= | ||||
cDNA_position | 59 | ||||
CDS_position | 54 | ||||
Protein_position | 18 | ||||
Exon_number | 2/8 | ||||
Codon_change | ctT/ctA | ||||
Amino_acid_change | L | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8928 VarS=AT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F40C5.1 | |||||
[20040130 db] this Allele was previously named snp_F40C5.1 | |||||
[20090224 db] original Wicks name : F40C5:6963..7983@514 Psnp=0.8928 VarS=AT | |||||
[20090224 db] original Wicks id : eam53e12.s1@439,a,34 eam53e12.s2@444,a,62 | |||||
Method | SNP_Wicks |