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WormBase Tree Display for Variation: WBVar00244584

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Name Class

WBVar00244584NamePublic_nameWBVar00244584
Other_namesnp_F36F12[1]
haw161990
cewivar00223645
F36F12.3f.1:c.-69-158T>C
F36F12.3f.2:c.-69-158T>C
F36F12.3e.1:c.145-158T>C
F36F12.3d.1:c.232-158T>C
HGVSgCHROMOSOME_V:g.2088082T>C
Sequence_detailsSMapS_parentSequenceF36F12
Flanking_sequencesatctgcaaattgccggtttgccgattgctgaaagttttcaattccggcaa
Mapping_targetF36F12
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00581855
StatusLive
AffectsGeneWBGene00018094
TranscriptF36F12.3f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF36F12.3f.1:c.-69-158T>C
Intron_number5/9
F36F12.3f.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF36F12.3f.2:c.-69-158T>C
Intron_number6/10
F36F12.3d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF36F12.3d.1:c.232-158T>C
Intron_number2/5
F36F12.3e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF36F12.3e.1:c.145-158T>C
Intron_number1/3
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9407 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F36F12.1
[20040130 db] this Allele was previously named snp_F36F12.1
[20090224 db] original Wicks name : F36F12:4096..4887@485 Psnp=0.9407 VarS=CT
[20090224 db] original Wicks id : yy59c09.s1@258,c,53
[20090224 db] Snip-SNP
MethodSNP_Wicks