WormBase Tree Display for Variation: WBVar00244584
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WBVar00244584 | Name | Public_name | WBVar00244584 | ||
---|---|---|---|---|---|
Other_name | snp_F36F12[1] | ||||
haw161990 | |||||
cewivar00223645 | |||||
F36F12.3f.1:c.-69-158T>C | |||||
F36F12.3f.2:c.-69-158T>C | |||||
F36F12.3e.1:c.145-158T>C | |||||
F36F12.3d.1:c.232-158T>C | |||||
HGVSg | CHROMOSOME_V:g.2088082T>C | ||||
Sequence_details | SMap | S_parent | Sequence | F36F12 | |
Flanking_sequences | atctgcaaattgccggtttgccgat | tgctgaaagttttcaattccggcaa | |||
Mapping_target | F36F12 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00581855 | |||
Status | Live | ||||
Affects | Gene | WBGene00018094 | |||
Transcript | F36F12.3f.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F36F12.3f.1:c.-69-158T>C | ||||
Intron_number | 5/9 | ||||
F36F12.3f.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F36F12.3f.2:c.-69-158T>C | ||||
Intron_number | 6/10 | ||||
F36F12.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F36F12.3d.1:c.232-158T>C | ||||
Intron_number | 2/5 | ||||
F36F12.3e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F36F12.3e.1:c.145-158T>C | ||||
Intron_number | 1/3 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9407 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F36F12.1 | |||||
[20040130 db] this Allele was previously named snp_F36F12.1 | |||||
[20090224 db] original Wicks name : F36F12:4096..4887@485 Psnp=0.9407 VarS=CT | |||||
[20090224 db] original Wicks id : yy59c09.s1@258,c,53 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |