WormBase Tree Display for Variation: WBVar00244577

WBVar00244577 Name: Public_name: WBVar00244577
    Other_name: snp_F36D1[2]
      cewivar00169792
      CE41237:p.Pro80=
      F36D1.7.1:c.240G>T
    HGVSg: CHROMOSOME_I:g.11263463G>T
  Sequence_details: SMap: S_parent: Sequence: F36D1
    Flanking_sequences: aatcagctgaaactctcggaaatcc gggaaatccggaaattctggatcgc
    Mapping_target: F36D1
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: SNP_Wicks
      WGS_De_Bono
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01348783
    Status: Live
  Affects: Gene: WBGene00009466
    Transcript: F36D1.7.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F36D1.7.1:c.240G>T
        HGVSp: CE41237:p.Pro80=
        cDNA_position: 353
        CDS_position: 240
        Protein_position: 80
        Exon_number: 3/5
        Codon_change: ccG/ccT
        Amino_acid_change: P
  Reference: WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9301 VarS=GT
    Enzymes. Bristol-specific: [Acc38I,AeuI,AhaI,AorI,ApaORI,ApyI,AseII,Asp1I,Asp2HI,Asp748I,AsuC2I,Atu1I,AtuBI,AtuII,BciBII,BcnI,Bco27I,BinSI,BsaNI,BsaZI,Bse16I,Bse17I,Bse24I,BseBI,BshGI,BshMI,BsiLI,BsiSI,BsiUI,BsiVI,BsmSI,BsoGI,Bsp103I,Bsp116I,Bsp1591II,Bsp317I,Bsp44I,Bsp47I,Bsp48I,Bsp55I,Bsp56I,Bsp5I,Bsp7I,Bsp8I,BspF105I,BspH43I,BspJ67I,BspNI,BspSI,BssT1I,Bst100I,Bst1I,Bst224I,Bst2I,Bst2UI,Bst38I,Bst40I,Bst7QII,BstGII,BstM6I,BstNI,BstOI,Bsu1192I,BsuFI,BthDI,BthEI,CbrI,Cdi27I,Cfr11I,Cfr20I,Cfr22I,Cfr24I,Cfr25I,Cfr27I,Cfr28I,Cfr29I,Cfr30I,Cfr31I,Cfr35I,Cfr58I,Cfr5I,CfrBI,CfrS37I,CthII,EagKI,EcaII,EciDI,Ecl136I,Ecl137II,Ecl1zII,Ecl37kII,Ecl54kI,Ecl57kI,Ecl66I,EclII,EclS39I,Eco121I,Eco128I,Eco130I,Eco170I,Eco179I,Eco1831I,Eco190I,Eco193I,Eco206I,Eco207I,Eco208II,Eco254I,Eco256I,Eco38I,Eco40I,Eco41I,Eco60I,Eco61I,Eco67I,Eco70I,Eco71I,EcoHI,EcoRII,EcoT104I,EcoT14I,ErhB9II,ErhI,Ese6II,Esp24I,Esp2I,EspHK22I,EspHK30I,EspHK7I,FinII,Fsp1604I,HapII,HgiS21I,HgiS22I,HhdI,Hin2I,Hin3I,Hin5I,HpaII,HpyF43I,HpyVIII,Kox165I,Kpn10I,Kpn13I,Kpn14I,Kpn16I,Kpn49kII,KspHK12I,KspHK14I,Lla497I,Mgl14481I,Mlu2300I,MniII,MnoI,MphI,MspI,MvaI,NciI,Pae181I,Pde137I,Pme35I,PspGI,RshII,Sau16I,SblAI,SblBI,SblCI,Scg2I,SecII,SfaGUI,Sfl2aI,Sfl2bI,SflHK10695I,SflHK10790I,SflHK11086I,SflHK11087I,SflHK11572I,SflHK115731I,SflHK1794I,SflHK2374I,SflHK2731I,SflHK6873I,SflHK7234I,SflHK7462I,SflHK8401I,Sgr20I,SleI,SniI,SslI,Ssp2I,SspAI,Sth117I,Sth134I,Sth455I,StyI,TaqXI,Tmu1I,TspAI,Uba1114I,Uba1118I,Uba1120I,Uba1121I,Uba1125I,Uba1128I,Uba1141I,Uba1171I,Uba1181I,Uba1185I,Uba1189I,Uba1193I,Uba11I,Uba1218I,Uba1243I,Uba1267I,Uba1280I,Uba1311I,Uba1318I,Uba1338I,Uba1347I,Uba1355I,Uba1370I,Uba1372I,Uba1376I,Uba1378I,Uba1389I,Uba13I,Uba1401I,Uba1410I,Uba1423I,Uba1424I,Uba1428I,Uba1439I,Uba20I,Uba41I,Uba42I,Uba81I,Uba82I,ZanI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_F36D1.2
    [20040130 db] this Allele was previously named snp_F36D1.2
    [20090224 db] original Wicks name : F36D1:10204..11177@657 Psnp=0.9301 VarS=GT
    [20090224 db] original Wicks id : yw17b06.s1@254,t,46
    [20090224 db] Snip-SNP
  Method: SNP_Wicks