WormBase Tree Display for Variation: WBVar00244517

WBVar00244517 Name: Public_name: WBVar00244517
    Other_name (16)
    HGVSg: CHROMOSOME_I:g.11531035A>G
  Sequence_details: SMap: S_parent: Sequence: F32B4
    Flanking_sequences: gtttcgacgcccggaacttattccg atcattttcgcgaaatcccttgcgt
    Mapping_target: F32B4
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: SNP_Wicks
      WGS_De_Bono
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01349282
    Status: Live
  Affects: Gene: WBGene00001131
    Transcript: F15D3.1j.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1j.1:c.6597T>C
        HGVSp: CE49315:p.Ile2199=
        cDNA_position: 8747
        CDS_position: 6597
        Protein_position: 2199
        Exon_number: 35/40
        Codon_change: atT/atC
        Amino_acid_change: I
      F15D3.1a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1a.1:c.10107T>C
        HGVSp: CE27129:p.Ile3369=
        cDNA_position: 10166
        CDS_position: 10107
        Protein_position: 3369
        Exon_number: 43/49
        Codon_change: atT/atC
        Amino_acid_change: I
      F15D3.1d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1d.1:c.6630T>C
        HGVSp: CE49191:p.Ile2210=
        cDNA_position: 6630
        CDS_position: 6630
        Protein_position: 2210
        Exon_number: 27/32
        Codon_change: atT/atC
        Amino_acid_change: I
      F15D3.1i.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1i.1:c.9396T>C
        HGVSp: CE49403:p.Ile3132=
        cDNA_position: 9396
        CDS_position: 9396
        Protein_position: 3132
        Exon_number: 37/42
        Codon_change: atT/atC
        Amino_acid_change: I
      F15D3.1c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1c.1:c.9429T>C
        HGVSp: CE49296:p.Ile3143=
        cDNA_position: 9429
        CDS_position: 9429
        Protein_position: 3143
        Exon_number: 38/43
        Codon_change: atT/atC
        Amino_acid_change: I
      F15D3.1h.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1h.1:c.10074T>C
        HGVSp: CE24903:p.Ile3358=
        cDNA_position: 10074
        CDS_position: 10074
        Protein_position: 3358
        Exon_number: 41/47
        Codon_change: atT/atC
        Amino_acid_change: I
      F15D3.1e.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F15D3.1e.1:c.3816T>C
        HGVSp: CE49456:p.Ile1272=
        cDNA_position: 3816
        CDS_position: 3816
        Protein_position: 1272
        Exon_number: 15/20
        Codon_change: atT/atC
        Amino_acid_change: I
  Reference: WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9420 VarS=AG
    Enzymes. Bristol-specific: [CviBI,CviCI,CviDI,CviEI,CviFI,CviGI,FnuAI,HhaII,HinfI,Hpy166I,Hpy188I,HpyAIV,HpyF10II,HpyF11II,HpyF12II,HpyF15II,HpyF17I,HpyF18I,HpyF19II,HpyF27II,HpyF28I,HpyF2II,HpyF33I,HpyF38I,HpyF42III,HpyF44I,HpyF46IV,HpyF50II,HpyF55II,HpyF60I,HpyF61I,HpyF64III,HpyF71III,HpyF72III,HpyIV,NcaI,NovII,NsiHI,SscL1I,TfiI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_F32B4.2
    [20040130 db] this Allele was previously named snp_F32B4.2
    [20090224 db] original Wicks name : F32B4:31768..32595@202 Psnp=0.9420 VarS=AG
    [20090224 db] original Wicks id : yx26c08.s1@141,g,56
    [20090224 db] Snip-SNP
  Method: SNP_Wicks