WormBase Tree Display for Variation: WBVar00244380
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WBVar00244380 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244380 | |||
Other_name | snp_F23H12[2] | ||||
F23H12.3a.1:c.120+867dup | |||||
F23H12.3a.2:c.120+867dup | |||||
HGVSg | CHROMOSOME_V:g.12346943dup | ||||
Sequence_details | SMap | S_parent | Sequence | F23H12 | |
Flanking_sequences | aaaattcgcctacagaagtctggga | ctcccatagttccaacaaaaactac | |||
Mapping_target | F23H12 | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00009093 | |||
Transcript | F23H12.3a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F23H12.3a.1:c.120+867dup | ||||
Intron_number | 3/6 | ||||
F23H12.3a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F23H12.3a.2:c.120+867dup | ||||
Intron_number | 2/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.6662 VarI1=A | ||||
Enzymes. Bristol-specific: [BsmEI,BsmFI,BspLU11III,BstOZ616I,CviBI,CviCI,CviDI,CviEI,CviFI,CviGI,FnuAI,HhaII,HinfI,HpyAIV,HpyF10II,HpyF18I,HpyF2II,HpyF38I,HpyF44I,HpyF55II,HpyF60I,HpyF71III,HpyF72III,HpyIV,MlyI,NcaI,NovII,NsiHI,PleI,PpsI,SchI,SscL1I,TfiI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F23H12.2 | |||||
[20040130 db] this Allele was previously named snp_F23H12.2 | |||||
[20090224 db] original Wicks name : F23H12:4977..6832@1122 Psnp=0.6662 VarI1=A | |||||
[20090224 db] original Wicks id : yx28f06.s1@458,a,33 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |