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WormBase Tree Display for Variation: WBVar00244295

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Name Class

WBVar00244295NamePublic_nameWBVar00244295
Other_namesnp_F19B6[1]
haw154733
cewivar00209648
F19B6.1d.1:c.24A>C
CE46554:p.Val8=
F19B6.1a.2:c.-139A>C
HGVSgCHROMOSOME_IV:g.12336018T>G
Sequence_detailsSMapS_parentSequenceF19B6
Flanking_sequencesgaccgtacctcgttgttcgctgcaaacccgactccttcgtttagacatgt
Mapping_targetF19B6
Type_of_mutationSubstitutionTG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (13)
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00574598
StatusLive
AffectsGeneWBGene00008948
TranscriptF19B6.1a.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF19B6.1a.2:c.-139A>C
cDNA_position58
Exon_number1/10
F19B6.1d.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF19B6.1d.1:c.24A>C
HGVSpCE46554:p.Val8=
cDNA_position24
CDS_position24
Protein_position8
Exon_number1/8
Codon_changegtA/gtC
Amino_acid_changeV
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8657 VarS=GT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F19B6.1
[20040130 db] this Allele was previously named snp_F19B6.1
[20090224 db] original Wicks name : F19B6:17288..17996@358 Psnp=0.8657 VarS=GT
[20090224 db] original Wicks id : vl23d06.s1@267,g,38
MethodSNP_Wicks