WormBase Tree Display for Variation: WBVar00244295
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WBVar00244295 | Name | Public_name | WBVar00244295 | ||
---|---|---|---|---|---|
Other_name | snp_F19B6[1] | ||||
haw154733 | |||||
cewivar00209648 | |||||
F19B6.1d.1:c.24A>C | |||||
CE46554:p.Val8= | |||||
F19B6.1a.2:c.-139A>C | |||||
HGVSg | CHROMOSOME_IV:g.12336018T>G | ||||
Sequence_details | SMap | S_parent | Sequence | F19B6 | |
Flanking_sequences | gaccgtacctcgttgttcgctgcaa | acccgactccttcgtttagacatgt | |||
Mapping_target | F19B6 | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (13) | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00574598 | |||
Status | Live | ||||
Affects | Gene | WBGene00008948 | |||
Transcript | F19B6.1a.2 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F19B6.1a.2:c.-139A>C | ||||
cDNA_position | 58 | ||||
Exon_number | 1/10 | ||||
F19B6.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F19B6.1d.1:c.24A>C | ||||
HGVSp | CE46554:p.Val8= | ||||
cDNA_position | 24 | ||||
CDS_position | 24 | ||||
Protein_position | 8 | ||||
Exon_number | 1/8 | ||||
Codon_change | gtA/gtC | ||||
Amino_acid_change | V | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8657 VarS=GT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F19B6.1 | |||||
[20040130 db] this Allele was previously named snp_F19B6.1 | |||||
[20090224 db] original Wicks name : F19B6:17288..17996@358 Psnp=0.8657 VarS=GT | |||||
[20090224 db] original Wicks id : vl23d06.s1@267,g,38 | |||||
Method | SNP_Wicks |