WormBase Tree Display for Variation: WBVar00244270

WBVar00244270 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00244270
    Other_name: snp_F16F9[2]
      F16F9.1.2:c.*389del
      F16F9.1.1:c.*389del
    HGVSg: CHROMOSOME_X:g.8450324del
  Sequence_details: SMap: S_parent: Sequence: F16F9
    Flanking_sequences: tcacttttttctgctggtttttttt cttatttttcctatttctctcacgt
    Mapping_target: F16F9
    Type_of_mutation: Deletion: T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00017513
    Transcript: F16F9.1.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: F16F9.1.1:c.*389del
        cDNA_position: 868
        Exon_number: 5/5
      F16F9.1.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: F16F9.1.2:c.*389del
        cDNA_position: 1025
        Exon_number: 6/6
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.8571 VarD1=T
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_F16F9.2
    [20040130 db] this Allele was previously named snp_F16F9.2
    [20090224 db] original Wicks name : F16F9:11424..12512@301 Psnp=0.8571 VarD1=T
    [20090224 db] original Wicks id : yx27c02.s1@51,-,35 yx27c02.s2@50,-,44 vl25f04.s1@224,-,38
  Method: SNP_Wicks