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WormBase Tree Display for Variation: WBVar00244236

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Name Class

WBVar00244236NamePublic_nameWBVar00244236
Other_namesnp_F14H3[1]
haw172937
cewivar00249357
CE47631:p.Gly52Ter
F14H3.15.1:c.154G>T
HGVSgCHROMOSOME_V:g.16059973C>A
Sequence_detailsSMapS_parentSequenceF14H3
Flanking_sequencesgggccgttgccagtcggcgccgttcgccaccaactaacgtcgcctgagaa
Mapping_targetF14H3
Type_of_mutationSubstitutionCA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00592802
StatusLive
AffectsGeneWBGene00219414
TranscriptF14H3.15.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF14H3.15.1:c.154G>T
HGVSpCE47631:p.Gly52Ter
cDNA_position154
CDS_position154
Protein_position52
Exon_number3/4
Codon_changeGga/Tga
Amino_acid_changeG/*
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.4972 VarS=AC
Enzymes. Bristol-specific: [AciI,BpuCI,EciI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_F14H3.1
[20040130 db] this Allele was previously named snp_F14H3.1
[20090224 db] original Wicks name : F14H3:10490..11665@436 Psnp=0.4972 VarS=AC
[20090224 db] original Wicks id : yw96h09.s1@364,a,28
[20090224 db] Snip-SNP
MethodSNP_Wicks