WormBase Tree Display for Variation: WBVar00244236
expand all nodes | collapse all nodes | view schema
WBVar00244236 | Name | Public_name | WBVar00244236 | ||
---|---|---|---|---|---|
Other_name | snp_F14H3[1] | ||||
haw172937 | |||||
cewivar00249357 | |||||
CE47631:p.Gly52Ter | |||||
F14H3.15.1:c.154G>T | |||||
HGVSg | CHROMOSOME_V:g.16059973C>A | ||||
Sequence_details | SMap | S_parent | Sequence | F14H3 | |
Flanking_sequences | gggccgttgccagtcggcgccgttc | gccaccaactaacgtcgcctgagaa | |||
Mapping_target | F14H3 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00592802 | |||
Status | Live | ||||
Affects | Gene | WBGene00219414 | |||
Transcript | F14H3.15.1 | VEP_consequence | stop_gained | ||
VEP_impact | HIGH | ||||
HGVSc | F14H3.15.1:c.154G>T | ||||
HGVSp | CE47631:p.Gly52Ter | ||||
cDNA_position | 154 | ||||
CDS_position | 154 | ||||
Protein_position | 52 | ||||
Exon_number | 3/4 | ||||
Codon_change | Gga/Tga | ||||
Amino_acid_change | G/* | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.4972 VarS=AC | ||||
Enzymes. Bristol-specific: [AciI,BpuCI,EciI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F14H3.1 | |||||
[20040130 db] this Allele was previously named snp_F14H3.1 | |||||
[20090224 db] original Wicks name : F14H3:10490..11665@436 Psnp=0.4972 VarS=AC | |||||
[20090224 db] original Wicks id : yw96h09.s1@364,a,28 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |