WormBase Tree Display for Variation: WBVar00244151
expand all nodes | collapse all nodes | view schema
WBVar00244151 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244151 | |||
Other_name | snp_F11D5[3] | ||||
F11D5.3b.2:c.1841+58dup | |||||
F11D5.3b.1:c.1841+58dup | |||||
F11D5.3a.1:c.1931+58dup | |||||
HGVSg | CHROMOSOME_X:g.3323180dup | ||||
Sequence_details | SMap | S_parent | Sequence | F11D5 | |
Flanking_sequences | TTTGTGCATTAATGGTGAAAGATTTATAGCTTGAACTTGAGAAAAAAAAA | TTTCTTTACCTGTAGCTCGAAAGTTATGTCCTAGACTCCCAGTGCTCCAT | |||
Mapping_target | F11D5 | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00017381 | |||
Transcript | F11D5.3b.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F11D5.3b.2:c.1841+58dup | ||||
Intron_number | 13/14 | ||||
F11D5.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11D5.3b.1:c.1841+58dup | ||||
Intron_number | 12/14 | ||||
F11D5.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11D5.3a.1:c.1931+58dup | ||||
Intron_number | 13/15 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9195 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_F11D5.3 | |||||
[20040130 db] this Allele was previously named snp_F11D5.3 | |||||
[20090224 db] original Wicks name : F11D5:21292..21891@331 Psnp=0.9195 VarI1=A | |||||
[20090224 db] original Wicks id : hz76c11.s1@290,a,53 | |||||
Method | SNP_Wicks |