WormBase Tree Display for Variation: WBVar00244126
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| WBVar00244126 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00244126 | |||
| Other_name | snp_F10D2[3] | ||||
| cewivar00235942 | |||||
| F10D2.7.1:c.1224T>A | |||||
| CE09318:p.Ser408= | |||||
| HGVSg | CHROMOSOME_V:g.7146052A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F10D2 | |
| Flanking_sequences | ccagatcatatttcgatagctcgat | gatccattgtgacggacaagcattttagtatttctcatttggtcgaa | |||
| Mapping_target | F10D2 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017333 | |||
| Transcript | F10D2.7.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F10D2.7.1:c.1224T>A | ||||
| HGVSp | CE09318:p.Ser408= | ||||
| cDNA_position | 1224 | ||||
| CDS_position | 1224 | ||||
| Protein_position | 408 | ||||
| Exon_number | 5/6 | ||||
| Codon_change | tcT/tcA | ||||
| Amino_acid_change | S | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9407 VarS=AT | ||||
| Enzymes. Bristol-specific: [AitAI,AitII,Asp14HI,Asp17I,Asp1HI,Asp21HI,Asp22I,Asp6HI,Asp8HI,BloHI,BscSI,BstX2I,BstYI,DsaIII,MflI,PsuI,Tru201I,Uba1432I,XhoII]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_F10D2.3 | |||||
| [20040130 db] this Allele was previously named snp_F10D2.3 | |||||
| [20090224 db] original Wicks name : F10D2:13522..14489@477 Psnp=0.9407 VarS=AT | |||||
| [20090224 db] original Wicks id : eam35e05.s1@405,t,53 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
